Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g2116 ATGGGAGATGATAGCAGGTTGATCATGGAGGAAGACAAAGATTTCCACTCTCTTAATAATCCTTCGTCATCACTAATACCGTCTCTGACGATGCACTTCTCTTCGCTGATGATCGACGTTGAAGACCGCAGCAGTATCGTTGCCACAAAAACCTTTTCCTATAACAAGCTTCCTTCTGAACCATTCACCCTCTCCATTCTCAAATTGGACGGATCTTGCTTCCATGTTGAAGTTGCGAAAACGGCAACTGTTGCGGAACTCAATCGTGCGGTGGAGGCGGTTTTTAGTCACACGCCTCAGAAATGGCCAGAGGAAATACCGTGGGCTCATGTTTGGGGGCAATTTTGCTTATGTTATGAAGGACGTAAGCTTGTCATTGAAACAACTTATCTTAGAGATTATGGCATTAAGGATGGTGACCAGCTTCGTTTCATACGTCATGTACCTAATACTTGTTTACAAAGAAAGAGGCTAAAGAAAAGAGTTGTCAATTTGAAAATAAAAAGGAGGTATAGGTCATCCTCCAAAGCGAATAGATATCAACAGAAACTAGGATGTGGAGGTGACGACGACATTGGTTTCGATGAAGAATATCTTGTTGGCAAGGAGAGATTAACGGGCTTTTTGGGAGGTTTGTTCTCATACAACCGGATGGCAGTTGCGGAAAGAGCAAGAACTGAAAGCAGGGTTTGCCCCTCATCCATTGCTGAAGGTATACTTGGCAGTTTTAGGAAGATTAGAAGGATGTTTAGCTTTTGTAGGAGGCAGCACTACTATCGTAGGCATACCTGA 792 0.4331 MGDDSRLIMEEDKDFHSLNNPSSSLIPSLTMHFSSLMIDVEDRSSIVATKTFSYNKLPSEPFTLSILKLDGSCFHVEVAKTATVAELNRAVEAVFSHTPQKWPEEIPWAHVWGQFCLCYEGRKLVIETTYLRDYGIKDGDQLRFIRHVPNTCLQRKRLKKRVVNLKIKRRYRSSSKANRYQQKLGCGGDDDIGFDEEYLVGKERLTGFLGGLFSYNRMAVAERARTESRVCPSSIAEGILGSFRKIRRMFSFCRRQHYYRRHT* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g2116 263 Gene3D - 57 154 - -
Amo08g2116 263 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 196 262 IPR039690 GO:0000398|GO:0005689
Amo08g2116 263 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 43 198 IPR039690 GO:0000398|GO:0005689
Amo08g2116 263 Pfam Ubiquitin-like domain 63 148 IPR040610 -
Amo08g2116 263 PANTHER - 196 262 - -
Amo08g2116 263 PANTHER - 43 198 - -
Amo08g2116 263 CDD Ubl_SNRNP25 62 147 IPR040610 -
Amo08g2116 263 SUPERFAMILY Ubiquitin-like 58 150 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g2116 Amo-Chr8 34019583 34021589 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g2116 - - ahf:112770563 480.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3648 16 147247430 147251076 Amo08g2116 08 34019583 34021589 PCT
Amo06g2846 06 93823172 93826675 Amo08g2116 08 34019583 34021589 PCT
Amo08g2116 08 34019583 34021589 Amo16g3648 16 147247430 147251076 PCT
Amo08g2116 08 34019583 34021589 Amo06g2846 06 93823172 93826675 PCT