Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2846 ATGGCACACACTAGCTTAATAATGCCGAACCCTAACCACGCCTCCTCTCCTTCTCGATCACCGTTGTCGATTCAATTCTCTTCGATCCCAGCCATGGACCGCATTTTCTCCAGTAAGAGTTTCCTTTATAATAGGCTTCGATCTCAGCCTCTCAGCCTTACTGTTCTCAAATTGGATGGATCTACCTTCGATATTCAAGTTGAGAAGACAGCAACTATTGCTGAGCTTAAGGAGGCGGTGAAGGTGGTGTTCAGTCACATGCCTCAGAAGGGGCCAGGGAAGATTTCATGGCCACATGTTTGGCGGCAGTTTTGCTTATGCTATGATGGACAGAAGCTTGTTAAAGATGACGATTACCTGAGAAATTATGGCATCAAGGACGGTGATCAGCTTCGTTTCATCCGCCATGTCTCAAACTATTATGGTGCTCGAAGAAGAAAGCGATCAAAGAAGCGAGTTTTCCATTTTAAACAGCACAGCAGGTCATCCTCGCAAGTGAATAGCTATCAACCTAAAGAACATAGTGATGATGATGAAGAAGAAATTTGTTCTGATGAGGTAGCCACTGAGGATAGGAAGATCGAGCTGTACAATAAAGTACGAGTTCATGTTGGAAAGAACAAGTTAACCAGCTTTGTTGCAGAGTTATTCTCATACAACAGGCTGCCTATTGTGCCGAAAACGAGAACTCAAAGTAGGATATTCTTCCCCTCAGTGGTTGCCAAATGTTTACTAGGAAGTTTTAGAAAGATGAGAAGAGTCATAAGCTTTCGCAGGAGGGGACACTACCCTTGGAGGGATATCAGAAGACAGTATTGA 819 0.4383 MAHTSLIMPNPNHASSPSRSPLSIQFSSIPAMDRIFSSKSFLYNRLRSQPLSLTVLKLDGSTFDIQVEKTATIAELKEAVKVVFSHMPQKGPGKISWPHVWRQFCLCYDGQKLVKDDDYLRNYGIKDGDQLRFIRHVSNYYGARRRKRSKKRVFHFKQHSRSSSQVNSYQPKEHSDDDEEEICSDEVATEDRKIELYNKVRVHVGKNKLTSFVAELFSYNRLPIVPKTRTQSRIFFPSVVAKCLLGSFRKMRRVISFRRRGHYPWRDIRRQY* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2846 272 ProSiteProfiles Ubiquitin domain profile. 51 134 IPR000626 GO:0005515
Amo06g2846 272 CDD Ubl_SNRNP25 51 136 IPR040610 -
Amo06g2846 272 MobiDBLite consensus disorder prediction 1 20 - -
Amo06g2846 272 MobiDBLite consensus disorder prediction 157 181 - -
Amo06g2846 272 Pfam Ubiquitin-like domain 52 137 IPR040610 -
Amo06g2846 272 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 4 268 IPR039690 GO:0000398|GO:0005689
Amo06g2846 272 SUPERFAMILY Ubiquitin-like 48 140 IPR029071 -
Amo06g2846 272 SMART ubq_7 51 136 IPR000626 GO:0005515
Amo06g2846 272 Gene3D - 45 144 - -
Amo06g2846 272 PANTHER - 4 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2846 Amo-Chr6 93823172 93826675 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2846 - - ahf:112697496 525.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3648 16 147247430 147251076 Amo06g2846 06 93823172 93826675 hybridization
Amo06g2846 06 93823172 93826675 Amo08g2116 08 34019583 34021589 PCT
Amo08g2116 08 34019583 34021589 Amo06g2846 06 93823172 93826675 PCT