Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g3178 ATGGTTATGGATAAGCTAAGCCAATATGAACGTGTGTTCAACCACTTCGATGAGAATGGAGACGGCAAGATATCGGCATCGGAGCTGAAGCAATGCGTGGAGGCCGTGGGTGGGGAGTTGTCGACCGAGGAGGCAGAGGTGGCCGTGACATTACTGGATTTGGACGGGGATGGGCTTCTGGGACTCGATGATTTTGTGAGGTTTGTGGAAGGAGGAGAAGAGGAAGAGAAAGTGAATGATTTAAGAGAGGCTTTTAAGATGTATGAGATGGATGGGAGTGGTTGCATCACACCAAAGAGCCTTAAGAGGATGCTTAGCAGGTTAGGTGAGTCTAGGTCTATAGATGATTGTAAATTTATGATATCTAGATTCGATCTCAATGGAGATGGAGTTCTTAATTTTGATGAATTCAGGGTCATGATGTTGTAA 429 0.4522 MVMDKLSQYERVFNHFDENGDGKISASELKQCVEAVGGELSTEEAEVAVTLLDLDGDGLLGLDDFVRFVEGGEEEEKVNDLREAFKMYEMDGSGCITPKSLKRMLSRLGESRSIDDCKFMISRFDLNGDGVLNFDEFRVMML* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g3178 142 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Amo16g3178 142 SMART efh_1 80 108 IPR002048 GO:0005509
Amo16g3178 142 SMART efh_1 44 72 IPR002048 GO:0005509
Amo16g3178 142 SMART efh_1 8 36 IPR002048 GO:0005509
Amo16g3178 142 SMART efh_1 116 142 IPR002048 GO:0005509
Amo16g3178 142 ProSiteProfiles EF-hand calcium-binding domain profile. 112 142 IPR002048 GO:0005509
Amo16g3178 142 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Amo16g3178 142 Gene3D - 3 73 - -
Amo16g3178 142 ProSiteProfiles EF-hand calcium-binding domain profile. 40 75 IPR002048 GO:0005509
Amo16g3178 142 CDD EFh 80 141 IPR002048 GO:0005509
Amo16g3178 142 ProSiteProfiles EF-hand calcium-binding domain profile. 76 111 IPR002048 GO:0005509
Amo16g3178 142 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Amo16g3178 142 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 4 142 - -
Amo16g3178 142 SUPERFAMILY EF-hand 5 141 IPR011992 -
Amo16g3178 142 Pfam EF-hand domain pair 79 141 IPR002048 GO:0005509
Amo16g3178 142 Pfam EF-hand domain pair 8 69 IPR002048 GO:0005509
Amo16g3178 142 Gene3D - 74 142 - -
Amo16g3178 142 ProSitePatterns EF-hand calcium-binding domain. 53 65 IPR018247 -
Amo16g3178 142 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 4 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g3178 Amo-Chr16 135954850 135956481 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g3178 10 141 EF-hand Containing Proteins AT1G76640 55.556 1.09e-46 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g3178 K13448 - qsu:111991949 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3178 16 135954850 135956481 Amo16g3178 16 135954850 135956481 ECH
Amo16g3178 16 135954850 135956481 Amo06g2597 06 89359871 89361452 hybridization
Amo16g3178 16 135954850 135956481 Amo10g3113 10 96749319 96750110 PCT
Amo10g3113 10 96749319 96750110 Amo16g3178 16 135954850 135956481 PCT