Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g2597 ATGGTTATGGATAAGCTAAGCCAATATGAACGTGTGTTCAACCACTTCGATGAGAATGGAGACGGCAAGATATCGGCATCGGAACTGAAGCAATGCGTGGAGGAAGTGGGTGGGGAGTTGTCGGCCAAGGAGGCGGAGGTGGCCGTAACATTACTGGATTTGGACGGGGATGGGCTTCTGGGACTCGATGATTTTGTGAGGTTTGTGGAAGGAGGACAAGAGGAAGAGAAAGTGAATGATTTAAGAGAGGCTTTTAAGATGTATGAGATGGACGGGAGTGGTTGCATCACACCAAAGAGCCTTAAGAGGATGCTTAGCAGGTTAGGTGAGTCTAGGTCTATAGATGATTGTAAATTTATGATATCTAGATTCGATCTCAATGGAGATGGAGTTCTTAATTTTGATGAATTCAGGGTCATGATGTTGTAA 429 0.4476 MVMDKLSQYERVFNHFDENGDGKISASELKQCVEEVGGELSAKEAEVAVTLLDLDGDGLLGLDDFVRFVEGGQEEEKVNDLREAFKMYEMDGSGCITPKSLKRMLSRLGESRSIDDCKFMISRFDLNGDGVLNFDEFRVMML* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g2597 142 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Amo06g2597 142 SUPERFAMILY EF-hand 6 141 IPR011992 -
Amo06g2597 142 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 4 142 - -
Amo06g2597 142 ProSiteProfiles EF-hand calcium-binding domain profile. 112 142 IPR002048 GO:0005509
Amo06g2597 142 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Amo06g2597 142 Gene3D - 1 72 - -
Amo06g2597 142 CDD EFh 80 141 IPR002048 GO:0005509
Amo06g2597 142 ProSiteProfiles EF-hand calcium-binding domain profile. 76 111 IPR002048 GO:0005509
Amo06g2597 142 ProSiteProfiles EF-hand calcium-binding domain profile. 40 75 IPR002048 GO:0005509
Amo06g2597 142 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Amo06g2597 142 Gene3D - 73 142 - -
Amo06g2597 142 Pfam EF-hand domain pair 79 141 IPR002048 GO:0005509
Amo06g2597 142 Pfam EF-hand domain pair 8 69 IPR002048 GO:0005509
Amo06g2597 142 SMART efh_1 80 108 IPR002048 GO:0005509
Amo06g2597 142 SMART efh_1 44 72 IPR002048 GO:0005509
Amo06g2597 142 SMART efh_1 8 36 IPR002048 GO:0005509
Amo06g2597 142 SMART efh_1 116 142 IPR002048 GO:0005509
Amo06g2597 142 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 4 142 - -
Amo06g2597 142 ProSitePatterns EF-hand calcium-binding domain. 53 65 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g2597 Amo-Chr6 89359871 89361452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g2597 10 141 EF-hand Containing Proteins AT1G76640 54.815 1.29e-45 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g2597 K13448 - qsu:111991949 227.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3178 16 135954850 135956481 Amo06g2597 06 89359871 89361452 hybridization
Amo06g2597 06 89359871 89361452 Amo10g3113 10 96749319 96750110 PCT
Amo10g3113 10 96749319 96750110 Amo06g2597 06 89359871 89361452 PCT