Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo10g3113 ATGATGAGCATGGTAGAGTTTGAGAGTGCTTTAAAATATTTTGATGAAAATGGGGATGGAAAAATTTCCCCTTTGGAGCTCAAGAACCATGTGGCCATCTTAGGTGGCGAGTTTCGGCATGAAGATGCCGAAATGGCCATCGCCGCGTGGGACTCGGACGGCGATGGATTCTTGAGTTTGAATGATTTTGTTGAGTTGATGGAAGAGTCCGGGGAAGAAGAGATGTTGAAGGATTTAAAAGAAGCGTTTGAGATGTATATTGATGTTGAAGAGTTGAGTGAGTTCATAACTCCAAAGAGTTTGAAAAGGATGCTTGGAAAGTTGGGAGAATCAAAATCTATTGATGAATGTGAACTTATGATCAAACATTTTGATCTCAATGGTGATGGCCTTCTTAGCTTTCAAGAATTTGTAATCATGATGGGAGTTGAATATACATCTGTTTGTTAA 450 0.3956 MMSMVEFESALKYFDENGDGKISPLELKNHVAILGGEFRHEDAEMAIAAWDSDGDGFLSLNDFVELMEESGEEEMLKDLKEAFEMYIDVEELSEFITPKSLKRMLGKLGESKSIDECELMIKHFDLNGDGLLSFQEFVIMMGVEYTSVC* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo10g3113 149 ProSitePatterns EF-hand calcium-binding domain. 125 137 IPR018247 -
Amo10g3113 149 SMART efh_1 6 34 IPR002048 GO:0005509
Amo10g3113 149 SMART efh_1 42 70 IPR002048 GO:0005509
Amo10g3113 149 SMART efh_1 116 144 IPR002048 GO:0005509
Amo10g3113 149 Pfam EF-hand domain pair 10 68 IPR002048 GO:0005509
Amo10g3113 149 SUPERFAMILY EF-hand 6 141 IPR011992 -
Amo10g3113 149 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Amo10g3113 149 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 4 141 - -
Amo10g3113 149 ProSiteProfiles EF-hand calcium-binding domain profile. 112 147 IPR002048 GO:0005509
Amo10g3113 149 Gene3D - 73 147 - -
Amo10g3113 149 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Amo10g3113 149 Pfam EF-hand domain pair 95 141 IPR002048 GO:0005509
Amo10g3113 149 Gene3D - 2 72 - -
Amo10g3113 149 CDD EFh 6 64 IPR002048 GO:0005509
Amo10g3113 149 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Amo10g3113 149 CDD EFh 78 141 IPR002048 GO:0005509
Amo10g3113 149 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 4 141 - -
Amo10g3113 149 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo10g3113 Amo-Chr10 96749319 96750110 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo10g3113 2 141 EF-hand Containing Proteins AT5G42380 47.183 3.46e-37 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo10g3113 K13448 - gmx:112998383 177.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g3178 16 135954850 135956481 Amo10g3113 10 96749319 96750110 PCT
Amo06g2597 06 89359871 89361452 Amo10g3113 10 96749319 96750110 PCT
Amo10g3113 10 96749319 96750110 Amo16g3178 16 135954850 135956481 PCT
Amo10g3113 10 96749319 96750110 Amo06g2597 06 89359871 89361452 PCT