Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g2087 ATGGCGTCGAGGCAACAATTCAAGGAAGATAGAGCTGAGGCAGCTGCAAAGCTTGCAGCCAAGGACATAGGCGATGTAAACAGAGAAAGAGAGCGTGACGAAGGTTACACGCTCAACTCCGAAAAGGCACGTGCTGAAGCCGCTGCAAAGCTTGCTGCCAAGGATCTTGAAGATGTGAACAGAGCAAGAGACACAGCTACTCTAGGTGTTTCGTACCACCAGCTACAGCAGCAGCAGCAGCAGCAAAACCCTGGTGTTGTAGGGTCCATGTTAAGGGCAGTGCACGACACTATCGAGCACGCAAAGGAAGCTGTGGTAGGGAAGACTCAGGAGACCGGAGAGGCGGTTAGCGACACTGCAAAATGTGTTTCTGAGAAGACAATGGAGACGAAGGACAAAGCAGGTACCAAAGTTGGAGAGTACGCTGGCTATGCTGCTGATAAAGCGAGAGAAACAAAAGATGTAACGATGAACAAGACTGGTGAGTATACAGATTATGCGTCTCAGAAAGCGAAAGATACTAAGGACTATACTGCTGATAAGACTATAGATGCCAAGAACAAGACAATGGAGAAATCTGGCGCGTATAAGGATTATGCTGCGGATAAGGCAAAGGAAGCGAAAGACGCTACAATGCAGAAGGCTGGGGAGTATAAGGATTATGCTGCTGACAAGGCGAAGGAAGCGAAGGATGCTACAAAGCAAAAAGCTGGAGAGTACAAGATTATGCTGCTGACAAGGCGACGGATGCAAAAGATTATGGTGCTGAGAGGCAAAGGAAGCAAAGACGCTACAGTGCAGAAGGCTGGAGAGTACTCAGAGTATACTGCGGAGAAGGCAAAAGAGGGGAAGGACACGACAATTGGGAAGCTTGGGGAGCTGAAAGACTCAGCTGCCGATGCTGCTAAGAGAGCTATGGATTTCTTCACCGGCAAGAAAGAGGAAACCAAGCAGAAGGCCGCAGAGACAACGGAAGCAGCCATGCAGAAGACTAATGAGGCAAAGGAGAAGCCGAGTGGAATAGAGGAAGAAGCAAGGAGAAAAATGGAAGGGATGAGGATGGAGGGAGGAGGAGGCACGGGCGGAGAGAGTAAGGTGTGGATCCGAGTGGAGGAGAGTCGACCTGGGGCGGCAGCAGATGCTTTAAAGGCAGCAGATGAGGCCTTGAATGATGCGGGGCGCCGTGAGAAAATGTGA 1197 0.5021 MASRQQFKEDRAEAAAKLAAKDIGDVNRERERDEGYTLNSEKARAEAAAKLAAKDLEDVNRARDTATLGVSYHQLQQQQQQQNPGVVGSMLRAVHDTIEHAKEAVVGKTQETGEAVSDTAKCVSEKTMETKDKAGTKVGEYAGYAADKARETKDVTMNKTGEYTDYASQKAKDTKDYTADKTIDAKNKTMEKSGAYKDYAADKAKEAKDATMQKAGEYKDYAADKAKEAKDATKQKAGEYKIMLLTRRRMQKIMVLRGKGSKDATVQKAGEYSEYTAEKAKEGKDTTIGKLGELKDSAADAAKRAMDFFTGKKEETKQKAAETTEAAMQKTNEAKEKPSGIEEEARRKMEGMRMEGGGGTGGESKVWIRVEESRPGAAADALKAADEALNDAGRREKM* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g2087 398 MobiDBLite consensus disorder prediction 1 40 - -
Amo16g2087 398 Gene3D - 195 245 - -
Amo16g2087 398 Gene3D - 140 194 - -
Amo16g2087 398 Gene3D - 258 312 - -
Amo16g2087 398 PANTHER - 42 395 - -
Amo16g2087 398 PANTHER - 1 36 - -
Amo16g2087 398 MobiDBLite consensus disorder prediction 1 42 - -
Amo16g2087 398 Coils Coil 313 333 - -
Amo16g2087 398 MobiDBLite consensus disorder prediction 313 365 - -
Amo16g2087 398 Coils Coil 42 62 - -
Amo16g2087 398 MobiDBLite consensus disorder prediction 329 353 - -
Amo16g2087 398 Pfam Late embryogenesis abundant protein 175 218 IPR004238 -
Amo16g2087 398 Pfam Late embryogenesis abundant protein 274 311 IPR004238 -
Amo16g2087 398 Pfam Late embryogenesis abundant protein 197 240 IPR004238 -
Amo16g2087 398 Pfam Late embryogenesis abundant protein 259 294 IPR004238 -
Amo16g2087 398 Pfam Late embryogenesis abundant protein 123 163 IPR004238 -
Amo16g2087 398 Pfam Late embryogenesis abundant protein 144 181 IPR004238 -
Amo16g2087 398 PANTHER LATE EMBRYOGENESIS ABUNDANT PROTEIN ECP63 42 395 - -
Amo16g2087 398 PANTHER LATE EMBRYOGENESIS ABUNDANT PROTEIN ECP63 1 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g2087 Amo-Chr16 72211773 72213480 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g2087 - - aip:107648779 582.408
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2087 16 72211773 72213480 Amo16g2087 16 72211773 72213480 ECH
Amo16g2087 16 72211773 72213480 Amo06g1522 06 45613041 45614811 hybridization
Amo16g2087 16 72211773 72213480 Amo12g3430 12 123474224 123476182 PCT
Amo12g3430 12 123474224 123476182 Amo16g2087 16 72211773 72213480 PCT