Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3430 ATGGAGTCAAGGGAACAATTGAAGGAAGAAAGCGCTGAACAAACTGCAAAAGATCTTGAAGAAGTTAACAAAGCTAGAAACCATGATCATGATGAACAACAAAAGCCAGGTGTAATTGGTTCAATGCTAAGAGCAGTTCATGACACATATGAAAGTGCTAAAGATGCTGTTGTTGGCAAAAGAGACAACACTACTACAAATGCAGCATCATCAGATATAACTACAACAAATAAAGGTGAAGAATTTGGAGGATTTGGTGCTGGTGAAGTGAGAGATATCTCTATTGGAAAAGCTAAGAATGCAAAAGATTATACAAAGGAACAAGCTGATTATGCAGCTGAAAAGGTAAAAGAATCAAAAGATGCTACAGTGGAAAAGGCAGGTGAATACACAGATTATGCATCACAGAAAGCAAAAGAAACAAAAGATGCTGCATCTCAAAAAGCCAAGGAAACTAAAGATGCAACCATGGATAAGGCTAAGGAAGCCAAGGACAAGACAGTGGAAAAGGGTGGTGAGTACAGAGATTATGCTTCGGAGAAGGCGAAGGAAGGGAAGGACACCACGGTGGGGAAGCTTGGGGAGCTGAAGGAGAGGGCGATGGGTTTCTTGGGAGGCAAGAAAGAAGAAACAAAGCAGAAGAGTGCAGACACAGTTGAAGCAACAAAGGACAAAGCTTATGATATGAAGGAAGCAACAGAGAACAAGGCTTCAGAAACTGCTGAGGCAGCAAAGCACAAAACCACTGAAGCTAAGGACAAGACCAAGGAAAACTTGAGCGGAGCAGAGGAAGAAGCAAGGAGGAAAATGGAAGAGCTTAAGGTGGAAGGTGGAGGAGGATACGACAGAGATCTGGAAACCGCCGCCGCCGGAGACAAGCCGTCAACGGTGAGATTGCAAAAGACGCGACCGGTTGCGGTGGCCGAAGCCTTGAAAGCATCTGACCAGATGACAGGACAGGCCTTCAACGACGTCGGACGGGTCGACGGCGACGGCGACGAAGAAGTTTCCAAGTAA 1017 0.4523 MESREQLKEESAEQTAKDLEEVNKARNHDHDEQQKPGVIGSMLRAVHDTYESAKDAVVGKRDNTTTNAASSDITTTNKGEEFGGFGAGEVRDISIGKAKNAKDYTKEQADYAAEKVKESKDATVEKAGEYTDYASQKAKETKDAASQKAKETKDATMDKAKEAKDKTVEKGGEYRDYASEKAKEGKDTTVGKLGELKERAMGFLGGKKEETKQKSADTVEATKDKAYDMKEATENKASETAEAAKHKTTEAKDKTKENLSGAEEEARRKMEELKVEGGGGYDRDLETAAAGDKPSTVRLQKTRPVAVAEALKASDQMTGQAFNDVGRVDGDGDEEVSK* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3430 338 MobiDBLite consensus disorder prediction 1 35 - -
Amo12g3430 338 Gene3D - 106 154 - -
Amo12g3430 338 Gene3D - 155 203 - -
Amo12g3430 338 Gene3D - 207 260 - -
Amo12g3430 338 MobiDBLite consensus disorder prediction 110 301 - -
Amo12g3430 338 PANTHER EMBRYOGENESIS ABUNDANT PROTEIN, PUTATIVE-RELATED 19 143 - -
Amo12g3430 338 PANTHER EMBRYOGENESIS ABUNDANT PROTEIN, PUTATIVE-RELATED 250 333 - -
Amo12g3430 338 PANTHER EMBRYOGENESIS ABUNDANT PROTEIN, PUTATIVE-RELATED 142 247 - -
Amo12g3430 338 MobiDBLite consensus disorder prediction 59 78 - -
Amo12g3430 338 Coils Coil 245 276 - -
Amo12g3430 338 PANTHER DAUER UP-REGULATED-RELATED 19 143 - -
Amo12g3430 338 PANTHER DAUER UP-REGULATED-RELATED 142 247 - -
Amo12g3430 338 PANTHER DAUER UP-REGULATED-RELATED 250 333 - -
Amo12g3430 338 Pfam Late embryogenesis abundant protein 153 196 IPR004238 -
Amo12g3430 338 Pfam Late embryogenesis abundant protein 109 152 IPR004238 -
Amo12g3430 338 MobiDBLite consensus disorder prediction 110 194 - -
Amo12g3430 338 MobiDBLite consensus disorder prediction 201 289 - -
Amo12g3430 338 MobiDBLite consensus disorder prediction 1 87 - -
Amo12g3430 338 Coils Coil 135 166 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3430 - - aip:107626431 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g3430 12 123474224 123476182 Amo12g3430 12 123474224 123476182 ECH
Amo16g2087 16 72211773 72213480 Amo12g3430 12 123474224 123476182 PCT
Amo06g1522 06 45613041 45614811 Amo12g3430 12 123474224 123476182 PCT
Amo12g3430 12 123474224 123476182 Amo16g2087 16 72211773 72213480 PCT
Amo12g3430 12 123474224 123476182 Amo06g1522 06 45613041 45614811 PCT