Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1522 ATGGCGTCGAGGCAACAATTCAAGGAAGATAGAGCAGAGGCAGCTGCAAAGCTTGCAGCCAAGGACATAGGCGATGTAAACAGAGAAAGAGAGCGTGACGAAGGTTACACGCTCAACTCCGAAAAGGCACGTGCTGAAGCCGCTGCAAAGCTTGCTGCCAAGGATCTCGAAGATGTGAACAGAGCAAGAGACACAGCTTCGTACCACAAGCTACAGCAGCAGCAGCAAAACCCTGATGTTATAGGGTCCATGTTAAGGGCAGTGCACGACACTATCGAGCACGCAAAGGAAGCTGTGGTAGGGAAGACTCAGGAGACCGGAGAGGCGGTTAGCGACACTGCAAAATGTGTTTCTGAGAAGACAATGGAGACGAAGGACAAAGCAGGTGCCAAAGTTGGAGAGTACGCTGGCTATGCTGCTGATAAAGCGAGAGAAACAAAAGATGTAACGATGAACAAAACTGGTGAGTATGCAGATTATGCGTCTCAGAAAGCGAAAGATACTAAGGACTATACTGCTGATAAYACTATAGAWGCCAAGAACAAGACAATGGAGAAATCTGGCGCGTATAAGGATTATGCTGCGGATAAGGCAAAGGAAGCGAAAGACGCTACAATGCAGAAGGCTGGGGAGTATAAGGATTATGCTGCTGACAAGGCGAAGGAAGCGAAGGATGCTACAAAGCAAAAAGCTGGAGAGTACAAYGATTATGCTGCTGACAAGGCGACGGATGCAAAAGATTATGGTGCTGAGAKGGCAAAGGAAGCYAAAGACGCTACAGTGCAGAAGGCTGGAGAGTACTCAGAGTATACTGCGGAGAAGGCAAAAGAGGGGAAGGACACGACAATTGGGAAGCTTGGGGAGCTGAAAGACTCAGCTGCCGATGCTGCTAAGAGAGCTATGGATTTCTTCACCGGCAAGAAAGAGGAAACCAAGCAGAAGGCCGCAGAGACAACGGAAGCAGCCACGCAGAAGACTAATGAGGCAAAGGTGAAGCTGCAGCTGAGTGGAATAGAGGAAGAAGCAAGGAGAAAAATGGAAGGGATGAGGATGGAGGGAGGAGGAGGACGAGGAGGCACGGGCGGAGAGAGTAAGGTGTGGATCCGAGTGGAGGAGAGTCGACCGGGGGCGGCGGCAGATGCTTTAAAGGCAGCAGATGAGGCCTTGAATGATGCGGGGCGCCGTGAGAAAATGTGA 1197 0.5029 MASRQQFKEDRAEAAAKLAAKDIGDVNRERERDEGYTLNSEKARAEAAAKLAAKDLEDVNRARDTASYHKLQQQQQNPDVIGSMLRAVHDTIEHAKEAVVGKTQETGEAVSDTAKCVSEKTMETKDKAGAKVGEYAGYAADKARETKDVTMNKTGEYADYASQKAKDTKDYTADNTIXAKNKTMEKSGAYKDYAADKAKEAKDATMQKAGEYKDYAADKAKEAKDATKQKAGEYNDYAADKATDAKDYGAEXAKEAKDATVQKAGEYSEYTAEKAKEGKDTTIGKLGELKDSAADAAKRAMDFFTGKKEETKQKAAETTEAATQKTNEAKVKLQLSGIEEEARRKMEGMRMEGGGGRGGTGGESKVWIRVEESRPGAAADALKAADEALNDAGRREKM* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1522 398 Pfam Late embryogenesis abundant protein 269 304 IPR004238 -
Amo06g1522 398 Pfam Late embryogenesis abundant protein 117 157 IPR004238 -
Amo06g1522 398 Pfam Late embryogenesis abundant protein 138 176 IPR004238 -
Amo06g1522 398 Pfam Late embryogenesis abundant protein 246 289 IPR004238 -
Amo06g1522 398 Pfam Late embryogenesis abundant protein 169 212 IPR004238 -
Amo06g1522 398 Pfam Late embryogenesis abundant protein 213 252 IPR004238 -
Amo06g1522 398 MobiDBLite consensus disorder prediction 18 39 - -
Amo06g1522 398 MobiDBLite consensus disorder prediction 334 351 - -
Amo06g1522 398 PANTHER - 42 228 - -
Amo06g1522 398 PANTHER - 179 395 - -
Amo06g1522 398 PANTHER - 1 35 - -
Amo06g1522 398 Coils Coil 42 62 - -
Amo06g1522 398 PANTHER LATE EMBRYOGENESIS ABUNDANT PROTEIN ECP63 42 228 - -
Amo06g1522 398 PANTHER LATE EMBRYOGENESIS ABUNDANT PROTEIN ECP63 179 395 - -
Amo06g1522 398 MobiDBLite consensus disorder prediction 334 398 - -
Amo06g1522 398 PANTHER LATE EMBRYOGENESIS ABUNDANT PROTEIN ECP63 1 35 - -
Amo06g1522 398 Gene3D - 250 307 - -
Amo06g1522 398 Gene3D - 166 218 - -
Amo06g1522 398 Coils Coil 308 328 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1522 Amo-Chr6 45613041 45614811 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1522 - - aip:107648779 581.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g2087 16 72211773 72213480 Amo06g1522 06 45613041 45614811 hybridization
Amo06g1522 06 45613041 45614811 Amo12g3430 12 123474224 123476182 PCT
Amo12g3430 12 123474224 123476182 Amo06g1522 06 45613041 45614811 PCT