Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1688 ATGAAAGGCATTGATATCTTCTGCGCTTCACAATCCTCAACAGCCATATCTCATGCCATGGAACAAGCCTCCTCTTCTTCTTCTTCTTCCAACACCTTCCATCTCGGTGGCAGGGCCCTCGACCGCCACAACCCCATCATCATGGATTCTAGAAGAACACCTTCTAGAGACTTCACTCTCCCACCGACTCCCTCTTCCGTTGACCCCAAACCTGGCCACCATGATCTCCAAAAGGGTAAGAAAAAATCATCATCATCGTCTTCTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTAAGAGAAGTTCAAGAAAGGGTCATGATAAGAAAAAGAGTGTGACAGAGAATAAGGTGACTGAACATTTTACCAACAATCACTCTTCAAAGGCCATTGATAGTGTTGTGAGAAGGAGTTGGGTCACTCCTGCTGGTTCATCAAGGTATCTGCTAAGTGACATATCAGATTATGATCCTGTTTTGGCTCTAAATACTTCTAATATTAATGTTGATGATGATAAAAAGAAGGGTCATCAAGTTGTTCATAATCAAGATGAAACAATAAAACATCATCATGCATCTAATTCTAAACCCTCCAGCTCCTCCTCTGCTCCAAAATCTGCTTCGTCAAACCAGGTTGTGGTATTAAGGGTTTCTCTACATTGCAAAGGTTGTGAAGGCAAAGTGAGGAAGCATCTCTCTAGAATGCAAGGAGTTACATCCTTCAACATAGATTTTGCGGCAAAGAAGGTGACAGTAGTTGGGGATGTGACTCCATTGAGTGTATTGGCAAGCATATCAAAGGTTAAGAATGCACAATTTTGGCCACCACCACCTTCTGGATCCGCTAGTAATCTAGAATCAAGAAAAAGAAACTTGGCCTAA 879 0.4209 MKGIDIFCASQSSTAISHAMEQASSSSSSSNTFHLGGRALDRHNPIIMDSRRTPSRDFTLPPTPSSVDPKPGHHDLQKGKKKSSSSSSSPSSSSSSSSKRSSRKGHDKKKSVTENKVTEHFTNNHSSKAIDSVVRRSWVTPAGSSRYLLSDISDYDPVLALNTSNINVDDDKKKGHQVVHNQDETIKHHHASNSKPSSSSSAPKSASSNQVVVLRVSLHCKGCEGKVRKHLSRMQGVTSFNIDFAAKKVTVVGDVTPLSVLASISKVKNAQFWPPPPSGSASNLESRKRNLA* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1688 292 ProSiteProfiles Heavy-metal-associated domain profile. 210 267 IPR006121 GO:0046872
Amo16g1688 292 MobiDBLite consensus disorder prediction 275 292 - -
Amo16g1688 292 MobiDBLite consensus disorder prediction 82 99 - -
Amo16g1688 292 PANTHER OS08G0405700 PROTEIN 1 283 IPR044526 -
Amo16g1688 292 SUPERFAMILY HMA, heavy metal-associated domain 210 267 IPR036163 GO:0046872
Amo16g1688 292 MobiDBLite consensus disorder prediction 17 35 - -
Amo16g1688 292 MobiDBLite consensus disorder prediction 271 292 - -
Amo16g1688 292 MobiDBLite consensus disorder prediction 184 208 - -
Amo16g1688 292 PANTHER COPPER CHAPERONE 1 283 - -
Amo16g1688 292 CDD HMA 213 266 IPR006121 GO:0046872
Amo16g1688 292 Pfam Heavy-metal-associated domain 214 266 IPR006121 GO:0046872
Amo16g1688 292 Gene3D - 207 271 - -
Amo16g1688 292 MobiDBLite consensus disorder prediction 192 208 - -
Amo16g1688 292 MobiDBLite consensus disorder prediction 17 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1688 Amo-Chr16 33520851 33523317 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1688 - - gmx:100786319 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1688 16 33520851 33523317 Amo06g1030 06 14912012 14914237 hybridization
Amo16g1688 16 33520851 33523317 Amo12g1080 12 29009763 29014730 PCT
Amo12g1080 12 29009763 29014730 Amo16g1688 16 33520851 33523317 PCT