Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1080 ATGTTCTGTGCTTCACAAGCCTCAACGGCAATTTGTGCCGCCATGGATGAAGCCTCATGCTCTTCTTCCACCAACACCATTCAACTCGGAGGCAAAGCCATCGACCGCCACAACCCCATCATCTGCCATTCTAGAAGAGCAACCCTCTCCTCCTCCTCCTCCTCCTCTTCTTCTTCTTCTCACCCACCAATCAACCCTCAGAAGAAAAGATCTTCTTCAAAACCATCATCAAGTAATGCAGAGAATAAGAACAAGAACAGTGCTAAAAAGGGTGGTCATCATGATCAYAAGAAGAAAAACGTAGCAGAAAATAKTGTCTACTCTTCTAAGCAGATTGATAGCGTTCTGGCYAGGAGAAGTTGGATTAAGCAAAATAATAATAATGGTGATTTATTCACTACTACTCCTCCTGTTGGTTCAACAAGGTGTTTGCTCAGTGACACTGCTTTCTTCGATGATAACAATGATGGTGTATCAGATTTTCATGATCCAGCTTTGGTATTAAATAATAATAATAATAATAAAAAGGGTCAAGATGAAATTCAAACTGAAAACAACACTTTATCTAAACCTTCTACCTCTTCCCATCATCCCAAGTCTGCTTCTTCAGACCAGCAGGAAGTTGTCCTAAGGGTTTCTTTGCACTGCAAGGGTTGTGAAGGGAAAGTGAGGAAACATCTCTCCAAAATGCAAGGAGTTAGTTCCTTTAAAATAGATTTTGCTTCAAAGAAGGTGACAGTTGTTGGGGATTTGACTCCATTGAGTGTGTTGACAAGCATATCAAAAGTGAAGAGTGCACAATTTTGGTCAGCAACTACTGATTCAGCTGTTGGATCTAGTTATTATGGTACTTTAGAAACAAACAACAAATATGTTATCTAA 882 0.398 MFCASQASTAICAAMDEASCSSSTNTIQLGGKAIDRHNPIICHSRRATLSSSSSSSSSSSHPPINPQKKRSSSKPSSSNAENKNKNSAKKGGHHDHKKKNVAENXVYSSKQIDSVLARRSWIKQNNNNGDLFTTTPPVGSTRCLLSDTAFFDDNNDGVSDFHDPALVLNNNNNNKKGQDEIQTENNTLSKPSTSSHHPKSASSDQQEVVLRVSLHCKGCEGKVRKHLSKMQGVSSFKIDFASKKVTVVGDLTPLSVLTSISKVKSAQFWSATTDSAVGSSYYGTLETNNKYVI* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1080 293 ProSiteProfiles Heavy-metal-associated domain profile. 213 266 IPR006121 GO:0046872
Amo12g1080 293 Gene3D - 202 267 - -
Amo12g1080 293 Pfam Heavy-metal-associated domain 210 256 IPR006121 GO:0046872
Amo12g1080 293 CDD HMA 209 262 IPR006121 GO:0046872
Amo12g1080 293 PANTHER OS08G0405700 PROTEIN 1 278 IPR044526 -
Amo12g1080 293 MobiDBLite consensus disorder prediction 165 204 - -
Amo12g1080 293 PANTHER COPPER CHAPERONE 1 278 - -
Amo12g1080 293 MobiDBLite consensus disorder prediction 40 106 - -
Amo12g1080 293 MobiDBLite consensus disorder prediction 161 204 - -
Amo12g1080 293 SUPERFAMILY HMA, heavy metal-associated domain 206 263 IPR036163 GO:0046872
Amo12g1080 293 MobiDBLite consensus disorder prediction 44 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1080 Amo-Chr12 29009763 29014730 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1080 - - aip:107625211 503.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1688 16 33520851 33523317 Amo12g1080 12 29009763 29014730 PCT
Amo06g1030 06 14912012 14914237 Amo12g1080 12 29009763 29014730 PCT
Amo12g1080 12 29009763 29014730 Amo16g1688 16 33520851 33523317 PCT
Amo12g1080 12 29009763 29014730 Amo06g1030 06 14912012 14914237 PCT