Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g1030 ATGAAAGGCATTGATATCTTCTGTGCTTCACAATCCTCAACAGCCATATCTCATGCCATGGAACAAGCCTCCTCTTCTTCTTCTTCTTCCAACACCTTCCATCTGGGTGGCAGGGCCCTCGACCGCCACAACCCCATCATCATGGATTCTAGAAGAACACCTTCTAGAGACTTCACTCTCCCACCGACTCCCTCTTCCGTTGACCCCAAACCTGGCCAGCATGATCTCCAAAAGGGTAAGAAAAAATCATCATCATCGTCTTCTCCTCCTTCTTCTTCTTCTTCTTCTAAGAGAAGTTCAAGAAAGGGTCATGATAAGAAAAAGAGTGTGACAGAGAATAAGGTGACTGAACATTTTACCAACAATCACTCTTCAAAGGCCATTGATAGTGTTGTGAGAAGGAGTTGGGTCACTCCTGCTGGTTCATCAAGGTATCTGCTACGTGACATATCAGATTATGATCCTGTTTTGGCTCTAACTACTTCTAATATTAATGTTGATGATGATAAAAAGAAGGGTCATCAAGTTGTTCATAATCAAGATGAAACAATAAAACATCATCATGCATCTAATTCTAAACCCTCTAGCTCCTCCTCTGCTCCAAAATCTGCTTCGTCAAACCAGGTTGTGGTATTAAGGGTTTCTCTACATTGCAAAGGTTGTGAAGGCAAAGTAAGGAAGCATCTCTCTAGAATGCAAGGAGTTACATCCTTCAACATAGATTTTGCGGCAAAGAAGGTGACAGTAGTTGGGGATGTGACTCCATTGAGTGTATTGGCAAGCATATCAAAGGTTAAGAATGCACAATTTTGGCCACCACCGCCTTCTGGATCCGCTAGTAATCCAGAATCAATAAAAAGAAACTTGGCCTAA 873 0.4227 MKGIDIFCASQSSTAISHAMEQASSSSSSSNTFHLGGRALDRHNPIIMDSRRTPSRDFTLPPTPSSVDPKPGQHDLQKGKKKSSSSSSPPSSSSSSKRSSRKGHDKKKSVTENKVTEHFTNNHSSKAIDSVVRRSWVTPAGSSRYLLRDISDYDPVLALTTSNINVDDDKKKGHQVVHNQDETIKHHHASNSKPSSSSSAPKSASSNQVVVLRVSLHCKGCEGKVRKHLSRMQGVTSFNIDFAAKKVTVVGDVTPLSVLASISKVKNAQFWPPPPSGSASNPESIKRNLA* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g1030 290 MobiDBLite consensus disorder prediction 269 290 - -
Amo06g1030 290 Pfam Heavy-metal-associated domain 212 264 IPR006121 GO:0046872
Amo06g1030 290 MobiDBLite consensus disorder prediction 82 97 - -
Amo06g1030 290 CDD HMA 211 264 IPR006121 GO:0046872
Amo06g1030 290 MobiDBLite consensus disorder prediction 17 122 - -
Amo06g1030 290 SUPERFAMILY HMA, heavy metal-associated domain 208 265 IPR036163 GO:0046872
Amo06g1030 290 MobiDBLite consensus disorder prediction 190 206 - -
Amo06g1030 290 MobiDBLite consensus disorder prediction 181 206 - -
Amo06g1030 290 MobiDBLite consensus disorder prediction 17 35 - -
Amo06g1030 290 PANTHER OS08G0405700 PROTEIN 1 286 IPR044526 -
Amo06g1030 290 ProSiteProfiles Heavy-metal-associated domain profile. 208 265 IPR006121 GO:0046872
Amo06g1030 290 Gene3D - 205 269 - -
Amo06g1030 290 PANTHER COPPER CHAPERONE 1 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g1030 Amo-Chr6 14912012 14914237 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g1030 - - gmx:100810015 281.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1688 16 33520851 33523317 Amo06g1030 06 14912012 14914237 hybridization
Amo06g1030 06 14912012 14914237 Amo12g1080 12 29009763 29014730 PCT
Amo12g1080 12 29009763 29014730 Amo06g1030 06 14912012 14914237 PCT