Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g1245 ATGGCATCGGAGACGAAGATCGTGAATCTGGCCGAGGAGGCCAAGCTAGCCAGAGAAGGCGTCAAGGCTGCTCCCAGCTATGCCTTCACCAGCATCTGCAAGTCCCTCGTCGCTGGTGGCGTCGCCGGAGGAGTATCACGAACAGCTGTTGCTCCACTTGAACGCCTGAAGATTTTGCTGCAGGTCCAGAATCCCCACAACATAAAATACAATGGAACAGTTCAAGGTCTAAAATATATATGGAGGACTGAAGGTTTTCGTGGACTCTTCAAAGGGAATGGAACTAATTGTGCTCGAATTGTCCCCAATTCTGCAGTAAAGTTCTTCAGTTATGAGCAAGCTTCGAAAGCTATACTGCAGCTGTATCAGCAGAAAACTGGAAATGAGGATGCTCAGCTGACTCCTGTKTTACGTCTTGGAGCTGGAGCATGTGCTGGAATAATTGCCATGTCCGCAACTTATCCAATGGATATGGTTCGAGGCAGGATAACTGTACAGACAGAGAAGTCCCCTTACCAGTACAGAGGGATGTTCCATGCTTTGACAACTGTGCTTAGGGAAGAAGGCCCACGTGCTTTATATAAGGGTTGGCTTCCTTCAGTCATTGGAGTTGTTCCATATGTAGGTCTAAACTTTGCTGTTTATGAGTCTTTGAAAGATTGGTTAGTTAAATCCAATCCATTTGGTCTAGTGCAAGATTCTGAGTTGAGTGTGACAACTCGCCTGGCATGTGGTGCTGCAGCTGGAACTGTTGGGCAAACTGTTGCTTATCCCCTTGATGTCATTCGTCGAAGAATGCAGATGGTGGGGTGGAACCATGCTGCCTCTGTTGTAGCTGGCGATGGAAGAGTAAAGGCCCCACTTGAATATACTGGCATGGTTGATGCATTTAGGAAAACTGTTCGGTATGAAGGAGTTGGTGCATTATACAAGGGTCTGGTTCCCAATTCTGTAAAGGTCGTCCCATCCATAGCAATTGCATTTGTAACATATGAGGTGGTGAAGGACGTTTTAGGAGTGGAGTTCAGAATATCAGACTGA 1041 0.4669 MASETKIVNLAEEAKLAREGVKAAPSYAFTSICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPHNIKYNGTVQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKAILQLYQQKTGNEDAQLTPVLRLGAGACAGIIAMSATYPMDMVRGRITVQTEKSPYQYRGMFHALTTVLREEGPRALYKGWLPSVIGVVPYVGLNFAVYESLKDWLVKSNPFGLVQDSELSVTTRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWNHAASVVAGDGRVKAPLEYTGMVDAFRKTVRYEGVGALYKGLVPNSVKVVPSIAIAFVTYEVVKDVLGVEFRISD* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g1245 346 PRINTS Mitochondrial carrier protein signature 35 48 IPR002067 GO:0055085
Amo16g1245 346 PRINTS Mitochondrial carrier protein signature 48 62 IPR002067 GO:0055085
Amo16g1245 346 PRINTS Mitochondrial carrier protein signature 92 112 IPR002067 GO:0055085
Amo16g1245 346 PRINTS Mitochondrial carrier protein signature 148 166 IPR002067 GO:0055085
Amo16g1245 346 PRINTS Mitochondrial carrier protein signature 194 212 IPR002067 GO:0055085
Amo16g1245 346 PRINTS Mitochondrial carrier protein signature 245 267 IPR002067 GO:0055085
Amo16g1245 346 ProSiteProfiles Solute carrier (Solcar) repeat profile. 133 221 IPR018108 -
Amo16g1245 346 PANTHER BNAA09G39370D PROTEIN 4 341 - -
Amo16g1245 346 Pfam Mitochondrial carrier protein 235 338 IPR018108 -
Amo16g1245 346 Pfam Mitochondrial carrier protein 31 118 IPR018108 -
Amo16g1245 346 Pfam Mitochondrial carrier protein 133 225 IPR018108 -
Amo16g1245 346 SUPERFAMILY Mitochondrial carrier 31 333 IPR023395 -
Amo16g1245 346 ProSiteProfiles Solute carrier (Solcar) repeat profile. 30 117 IPR018108 -
Amo16g1245 346 Gene3D Mitochondrial carrier domain 28 340 IPR023395 -
Amo16g1245 346 ProSiteProfiles Solute carrier (Solcar) repeat profile. 236 337 IPR018108 -
Amo16g1245 346 PANTHER SOLUTE CARRIER FAMILY 25 4 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g1245 Amo-Chr16 21110989 21115314 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g1245 36 341 EF-hand Containing Proteins AT5G51050 38.762 2.32e-67 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g1245 K14684 - gmx:100777048 632.484
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1245 16 21110989 21115314 Amo12g0204 12 2999611 3003578 PCT
Amo16g1245 16 21110989 21115314 Amo02g0242 02 2771677 2773380 PCT
Amo12g0204 12 2999611 3003578 Amo16g1245 16 21110989 21115314 PCT
Amo02g0242 02 2771677 2773380 Amo16g1245 16 21110989 21115314 PCT