Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0204 ATGGCTTCGGAAGATGTGAAGAGCGGTGAATCTGCAGTCACAAAGATCGTTACTCTGGCTGAGGAAGCTAAGCTCGCTAGTCGTGAAGGCGTTGTCACCGCCGCCGCCGCTCCTTCCTACGCCTTCACCACCATCTGCAAGTCCCTTATCGCCGGTGGAGTCGCCGGAGGAGTATCACGAACAGCAGTTGCCCCACTGGAACGGTTGAAGATTTTGCTACAGGTCCAGAATCCTCATAACATTAAATACAATGGAACAGTCCAAGGCCTGAAATATATATGGAGAACTGAAGGTTTTCGTGGACTGTTCAAAGGGAATGGTACTAATTGTGCTCGGATTGTCCCTAACTCTGCAGTGAAGTTCTTCAGTTATGAGCAAGCTTCTAAGGGTATCCTGTATATGTATAGGCAGCAAACTGGAAATGAGGATGCTCAGCTGACTCCTGTTTTACGACTTGGAGCTGGAGCATGTGCTGGAATAATTGCCATGTCTGCAACTTATCCAATGGATATGGTTCGAGGCAGGATAACTGTACAGACTGAGAAATCCCCTTATCAGTATAGAGGAATGTTCCATGCTCTGTCTACCGTACTTAGGGAAGAAGGTCCACGTGCTTTATACAAGGGTTGGCTACCTTCAGTAATTGGAGTTATTCCTTATGTGGGTCTCAACTTTGCTGTCTACGAGTCTTTAAAAGATTGGTTAATCAAATCCAAACCGTTTGGTCTAGCTCAAGATTCTGAGTTGAGTGTGACAACACGTCTGGCTTGTGGTGCTGTTGCCGGAACTTTTGGACAAACTGTTGCTTATCCTCTCGACGYCATTCGTCGAAGAATGCAGATGGTGGGCTGGAACCATGCTGCTTCTGTTGTAGCTGGGGACGGAAGAGGCAAGGTCCCGCTCGAATACACTGGAATGATAGATGCATTTAGGAAAACCGTTCGRTACGAGGGATTTGGTGCATTATACAAGGGTCTGGTGCCAAATTCTGTAAAGGTGGTGCCGTCCATAGCAATCGCATTTGTAACGTACGAGGTGGTGAAGGACATTCTAGGAGTCGAGTTCCGAATATCAGACTGA 1080 0.4713 MASEDVKSGESAVTKIVTLAEEAKLASREGVVTAAAAPSYAFTTICKSLIAGGVAGGVSRTAVAPLERLKILLQVQNPHNIKYNGTVQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYMYRQQTGNEDAQLTPVLRLGAGACAGIIAMSATYPMDMVRGRITVQTEKSPYQYRGMFHALSTVLREEGPRALYKGWLPSVIGVIPYVGLNFAVYESLKDWLIKSKPFGLAQDSELSVTTRLACGAVAGTFGQTVAYPLDXIRRRMQMVGWNHAASVVAGDGRGKVPLEYTGMIDAFRKTVRYEGFGALYKGLVPNSVKVVPSIAIAFVTYEVVKDILGVEFRISD* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0204 359 PANTHER SOLUTE CARRIER FAMILY 25 1 354 - -
Amo12g0204 359 Gene3D Mitochondrial carrier domain 41 353 IPR023395 -
Amo12g0204 359 PRINTS Mitochondrial carrier protein signature 61 75 IPR002067 GO:0055085
Amo12g0204 359 PRINTS Mitochondrial carrier protein signature 258 280 IPR002067 GO:0055085
Amo12g0204 359 PRINTS Mitochondrial carrier protein signature 48 61 IPR002067 GO:0055085
Amo12g0204 359 PRINTS Mitochondrial carrier protein signature 161 179 IPR002067 GO:0055085
Amo12g0204 359 PRINTS Mitochondrial carrier protein signature 105 125 IPR002067 GO:0055085
Amo12g0204 359 PRINTS Mitochondrial carrier protein signature 207 225 IPR002067 GO:0055085
Amo12g0204 359 ProSiteProfiles Solute carrier (Solcar) repeat profile. 249 350 IPR018108 -
Amo12g0204 359 Pfam Mitochondrial carrier protein 146 238 IPR018108 -
Amo12g0204 359 Pfam Mitochondrial carrier protein 248 351 IPR018108 -
Amo12g0204 359 Pfam Mitochondrial carrier protein 45 130 IPR018108 -
Amo12g0204 359 PANTHER BNAA09G39370D PROTEIN 1 354 - -
Amo12g0204 359 ProSiteProfiles Solute carrier (Solcar) repeat profile. 43 130 IPR018108 -
Amo12g0204 359 ProSiteProfiles Solute carrier (Solcar) repeat profile. 146 234 IPR018108 -
Amo12g0204 359 SUPERFAMILY Mitochondrial carrier 45 346 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0204 Amo-Chr12 2999611 3003578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0204 49 354 EF-hand Containing Proteins AT5G51050 39.414 1.03e-66 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0204 K14684 - gmx:100814032 644.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0204 12 2999611 3003578 Amo12g0204 12 2999611 3003578 ECH
Amo12g0204 12 2999611 3003578 Amo02g0242 02 2771677 2773380 hybridization
Amo16g1245 16 21110989 21115314 Amo12g0204 12 2999611 3003578 PCT
Amo12g0204 12 2999611 3003578 Amo16g1245 16 21110989 21115314 PCT