Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0242 GAGGATGCTCAGCTGACTCCTGTTTTACGACTTGGAGCTGGAGCATGTGCTGGAATAATTGCCATGTCTGCAACTTATCCAATGGATATGGTTCGAGGTAGGATAACTGTACAGATTCCTTATGTGGGTCTCAACTTTGCTGTCTACGAGTCTTTAAAAGATTGGTTAATCAAATCCAAACCGTTTGGTCTAGCTCAAGATTCTGAGTTGAGTGTGACAACACGTCTGGCTTGTGGTGCTGTTGCCGGAACTTTTGGACAAACTGTTGCTTATCCTCTCGACGCCATTCGTCGAAGAATGCAGATGGTGGGCTGGAACCATGCTGCTTCTGTTGTAGCTGGGGACGGAAGAGGCAAGGTCCCGCTCGAATACACTGGAATGATAGATGCATTTAGGAAAACCGTTCGATACGAGGGATTTGGTGCATTATACAAGGGTCTGGTGCCAAATTCTGTAAAGAAATCTGAAAATAACTCTAGGTTTTTCTCAAGTGTGTCTCTCGCCTTTTTCACTCATGGCTTTTTCTCAAGCTTTCTCACAATGCCTTTTCTCTCAAAAAATTACGAAAGATAA 573 0.4398 EDAQLTPVLRLGAGACAGIIAMSATYPMDMVRGRITVQIPYVGLNFAVYESLKDWLIKSKPFGLAQDSELSVTTRLACGAVAGTFGQTVAYPLDAIRRRMQMVGWNHAASVVAGDGRGKVPLEYTGMIDAFRKTVRYEGFGALYKGLVPNSVKKSENNSRFFSSVSLAFFTHGFFSSFLTMPFLSKNYER* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0242 190 ProSiteProfiles Solute carrier (Solcar) repeat profile. 70 171 IPR018108 -
Amo02g0242 190 PANTHER SOLUTE CARRIER FAMILY 25 1 38 - -
Amo02g0242 190 PANTHER BNAA09G39370D PROTEIN 39 172 - -
Amo02g0242 190 PANTHER BNAA09G39370D PROTEIN 1 38 - -
Amo02g0242 190 SUPERFAMILY Mitochondrial carrier 4 154 IPR023395 -
Amo02g0242 190 Gene3D Mitochondrial carrier domain 35 168 IPR023395 -
Amo02g0242 190 Pfam Mitochondrial carrier protein 69 163 IPR018108 -
Amo02g0242 190 PANTHER SOLUTE CARRIER FAMILY 25 39 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0242 Amo-Chr2 2771677 2773380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo02g0242 1 153 EF-hand Containing Proteins AT5G51050 31.937 1.19e-19 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0242 K14684 - gmx:100777048 278.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0204 12 2999611 3003578 Amo02g0242 02 2771677 2773380 hybridization
Amo16g1245 16 21110989 21115314 Amo02g0242 02 2771677 2773380 PCT
Amo02g0242 02 2771677 2773380 Amo16g1245 16 21110989 21115314 PCT