Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0970 ATGGCTTTTTCAACATTGCTCTCTTTTACTCTCTTCCTCTGTGTCTTATTGCCCTGTTTCGCTTCTTCTTTGGAAGCGAAACCAATCTCTTCTCTCATTAGAAAGAAGTTTTTTGATACCATGTTCCTACATAAAGATGACAATGCATGCCCTGCTAAGAACTTCTACCCTTACAAGGCCTTCATTCGCGCCGCSAAAACCTTCCCTGAATTCGGCACCACCGGCAGTTTAGACACACGGAAGCGTGAGATCGCTGCATTTCTTGCTCAAATTTCTCATGAGACGACTGGTGGATGGGCTACTGCACCTGATGGTCCATATGCRTGGGGTCTCTGCTTTAAGGAAGAGATTAATCCTCAGAGTAACTACTGTGATTCTACTAACAAACAATGGCCTTGTTTCCCAGGAAAATCTTACCATGGAAGAGGACCCATTCAACTTTCTTGGAACTACAATTATGGTCCAGCAGGGAAGGAGTTGGGATTTGATGGGTTGAGGAAGCCTGAGATTGTGTCAAACAATTCAGTGATTGCATTCAGAAGTGCTCTGTGGTTTTGGATGAGAGAGACAAGAGGAACACTTTCWTGCCACAATGTTATGGTTGGAAAATATGTGCCTTCAGAAGCCGACATAGCAGCAAACAGAACAGCTGGTTATGGCTTGGTTACTAACATCATCAATGGTGCACTTGAATGTGGAATCCCCAATGATCCAAGGGTCAASGATAGGATTGGATTTTTCAAAAGATATACCAACTTGTTCAACGTCGATACTGGACCTAACTTGGATTGTGCATTTCAGAAACCCTTGTAA 813 0.4305 MAFSTLLSFTLFLCVLLPCFASSLEAKPISSLIRKKFFDTMFLHKDDNACPAKNFYPYKAFIRAAKTFPEFGTTGSLDTRKREIAAFLAQISHETTGGWATAPDGPYAWGLCFKEEINPQSNYCDSTNKQWPCFPGKSYHGRGPIQLSWNYNYGPAGKELGFDGLRKPEIVSNNSVIAFRSALWFWMRETRGTLSCHNVMVGKYVPSEADIAANRTAGYGLVTNIINGALECGIPNDPRVXDRIGFFKRYTNLFNVDTGPNLDCAFQKPL* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0970 270 Gene3D - 36 269 - -
Amo16g0970 270 CDD chitinase_GH19 33 264 - -
Amo16g0970 270 ProSitePatterns Chitinases family 19 signature 2. 177 187 IPR000726 GO:0004568|GO:0006032|GO:0016998
Amo16g0970 270 Gene3D Endochitinase, domain 2 115 173 - -
Amo16g0970 270 PANTHER CHITINASE-RELATED 25 269 - -
Amo16g0970 270 PIRSF Endochitinase 8 270 IPR016283 GO:0004568|GO:0005975
Amo16g0970 270 Pfam Chitinase class I 33 264 IPR000726 GO:0004568|GO:0006032|GO:0016998
Amo16g0970 270 PANTHER OS05G0138200 PROTEIN 25 269 - -
Amo16g0970 270 SUPERFAMILY Lysozyme-like 29 269 IPR023346 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0970 Amo-Chr16 15673143 15674734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0970 28 270 Glycoside Hydrolase AT4G01700 70.370 4.02e-137 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0970 - - gmx:100784196 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0970 16 15673143 15674734 Amo06g0067 06 712018 713576 hybridization
Amo16g0970 16 15673143 15674734 Amo09g0744 09 12325563 12327398 PCT
Amo09g0744 09 12325563 12327398 Amo16g0970 16 15673143 15674734 PCT