Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0067 ATGGCTTTTTCAACATTGCTCTCTTTTACTCTCTTCCTCTGTGTCTGTTTCGCTTCTTCTTTGGAAGCGAAACCAATCTCTTCTCTGATTAGAAAGAAGCTTTTTGATACCATGTTCCTACATAAAGATGACAATGCATGCCCTGCTAAGAACTTCTACCCTTACAAGGCCTTCATTCGCGCCGCCAAAACCTTCCCTGAATTCGGCACCACCGGCAGTTTAGACACACGGAAGCGTGAGATTGCTGCATTTCTTGCTCAAATTTCGCATGAGACCACTGGTGGATGGGCTACTGCACCTGATGGTCCATATGCCTGGGGTCTCTGCTTTAAGGAAGAGATTAATCCTCAGAGTAACTACTGTGATTCTACTAACAAACAATGGCCTTGTTTCCCAGGAAAATCTTACCATGGAAGAGGACCCATTCAACTTTCTTGGAACTACAATTATGGTCCAGCAGGGAAGGAGTTGGGATTTGATGGGTTGAGGAAGCCTGAGATTGTGTCAAACAATTCAGTGATTGCATTCAGAAGTGCTCTGTGGTTTTGGATGAGAGAGACAAGAGGAACACTTTCATGCCACAATGTTATGGTTGGAAAATATGTGCCTTCAGAAGCCGACATAGCAGCAAACAGAACAGCTGGTTATGGCTTGGTTACTAACATCATCAATGGTGCACTTGAATGTGGAATCCCCAATGATCCAAGGGTCAACGATAGGATTGGATTTTTCAAAAGATATACCAACTTGTTCAACGTCGATACTGGACCTAACTTGGATTGTGCATTTCAGAAACCCTTGTAA 804 0.4353 MAFSTLLSFTLFLCVCFASSLEAKPISSLIRKKLFDTMFLHKDDNACPAKNFYPYKAFIRAAKTFPEFGTTGSLDTRKREIAAFLAQISHETTGGWATAPDGPYAWGLCFKEEINPQSNYCDSTNKQWPCFPGKSYHGRGPIQLSWNYNYGPAGKELGFDGLRKPEIVSNNSVIAFRSALWFWMRETRGTLSCHNVMVGKYVPSEADIAANRTAGYGLVTNIINGALECGIPNDPRVNDRIGFFKRYTNLFNVDTGPNLDCAFQKPL* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0067 267 SUPERFAMILY Lysozyme-like 26 266 IPR023346 -
Amo06g0067 267 Gene3D Endochitinase, domain 2 112 170 - -
Amo06g0067 267 Pfam Chitinase class I 30 261 IPR000726 GO:0004568|GO:0006032|GO:0016998
Amo06g0067 267 Gene3D - 33 266 - -
Amo06g0067 267 PIRSF Endochitinase 8 267 IPR016283 GO:0004568|GO:0005975
Amo06g0067 267 PANTHER CHITINASE-RELATED 22 266 - -
Amo06g0067 267 PANTHER OS05G0138200 PROTEIN 22 266 - -
Amo06g0067 267 CDD chitinase_GH19 30 261 - -
Amo06g0067 267 ProSitePatterns Chitinases family 19 signature 2. 174 184 IPR000726 GO:0004568|GO:0006032|GO:0016998
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0067 Amo-Chr6 712018 713576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0067 25 267 Glycoside Hydrolase AT4G01700 70.782 8.44e-138 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0067 - - gmx:100784196 444.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0970 16 15673143 15674734 Amo06g0067 06 712018 713576 hybridization
Amo06g0067 06 712018 713576 Amo09g0744 09 12325563 12327398 PCT
Amo09g0744 09 12325563 12327398 Amo06g0067 06 712018 713576 PCT