Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0856 ATGCTGCACAAGAGGCTCTTTCAAGGTCTATGGCCAATATCTGAAGTCTCTAGTGATCTTACTATTGAAGTAGAAGACTCAAGCTTTCCACTTCACAAGTTTCCTCTAGTTTCTAGGAGTGGAAGAATCAGAAAACTGCTGCTAGAAGCAAAAGATTCAAAGGTTTCACGCATAAGTCTCCAAAATGTGCCTGGTGGTATAGATGCATTTGAGCTAGCAGCTAAATTCTGCTATGGAATAAATGTTGAATTCACTCTCTCAAACGTTGCCAAGCTACGTTGCATAGCGCATTTTCTAGAAATGACTGAAGAATTTGCTGAGAAGAACTTGGAGACTAGAGCTGAATCATATCTAAAAGAGTCAGTTCTACCAAGCATACAAAACAGCATTAGTGTTCTTCACCATTGTGAGACTCTTCTCCCAATTTCAGAAGAAATTAACCTTGTTAGCAGGTTAATCAATTCAGTTGCAAACAATGCATGCAAACAACAACTTACCTCTGGATTGCTAAAACTTGATCATACTTTAAATTCTAAGACAATTTCAAACATGGAACCAGAAACTCCCTCGGATTGGTGGGGGAAATCTTTCAATGTTCTTGGCCTTGATTTTTTCCAGAGAGTAATTTCTGTGTTGAAATCAAAGGGTCTAAAACAAGATATGATCAGTAAGATTTTGATAAACTATGCACATAGTTCACTACAGGGGATTGCTCTTATTAGGGATCCTCAAGTTGTTAAAGGGAGTTTACCTGACTTGGAAGTAAAGAAAAAACAAAGGCTGGTCGTTGAAGCCATAGTTGGATTACTCCCTAATCAATCAAGGAAGAGCCAGGTTCCAATGGCATTCTTATCATTCCTGTTGAAGGCTGCTATCGCGGCTGGGGCCCCAACTTCTTGCAGGTGTGATTTGGAGAGGCGAATCGGCCTACAACTCGACCAGGCAATCCTAGAAGACATACTAATTCCGGCTAACTCGCTTCAGAACACACACAGCACAATATATGACACAGATTCAATCTTGAGGATTTTCTCAATTTTCCTTAACCTGGATGAGGAGGACGATGATGATGATAATGATGGTGGCTGCTTCAGAGATGAAAGCCAAATGGTGTATGACTTCGACAGCCCCGGATCTCCAAAACAAAGCTCAATCCTCAAAGTATCTAAACTGATGGATAACTATCTTGCTGAAGTAGCATTAGACTCAAACTTGTTACCATCAAAATTCACAGCACTTGCAGAACTACTCCCAGATCATGCACGCATAGTGAGTGATGGACTCTACAGAGCAGTTGATATCTTCCTTAAGGTTCATCCAAATATAAAGGATTCAGAGAGGTACCGGTTATGCAAAAGCATAGATTGCCAGAAACTGTCTCAAGAAGCATGCAGCCATGCAGCACAGAACGAGAGGCTGCCGGTGCAAATGGCGGTTCAAGTGCTTTACTTCGAGCAAATGAGACTGCGAAACGCGATGAACGGCGGAGGACACCACCACAGCAACAGCTTCTTGTTCGGCGGCCATTTCCCTCAGCGGACGGGAAGCGGTGCCGGAAGCGGCGCCATTTCGCCGAGGGATAACTACGCGTCGGTTCGAAGGGAGAATCGAGAGCTGAAGCTGGAGGTAGCGAGAATGAGGATGAGGCTGACTGATTTGGAGAAAGACCATGTTTCCATGAAACAGGAGCTTGTGAAGTCACAATACCCCGCTAACAAGCTTTTCAAATCTTTCACGAAGAAACTAAGCAAACTCAATTCTCTCTTTCGTTTAAGCACTAGTACTTTTAAGCAATCATCATTTGGTGCCAGTAATAATAATGCCAAAGGTATCGCTCATTCAGAAACTCATCGCTTTCCTTTTCCAAAAAGAAGACGCCACTCAGTTTCATGA 1893 0.4268 MLHKRLFQGLWPISEVSSDLTIEVEDSSFPLHKFPLVSRSGRIRKLLLEAKDSKVSRISLQNVPGGIDAFELAAKFCYGINVEFTLSNVAKLRCIAHFLEMTEEFAEKNLETRAESYLKESVLPSIQNSISVLHHCETLLPISEEINLVSRLINSVANNACKQQLTSGLLKLDHTLNSKTISNMEPETPSDWWGKSFNVLGLDFFQRVISVLKSKGLKQDMISKILINYAHSSLQGIALIRDPQVVKGSLPDLEVKKKQRLVVEAIVGLLPNQSRKSQVPMAFLSFLLKAAIAAGAPTSCRCDLERRIGLQLDQAILEDILIPANSLQNTHSTIYDTDSILRIFSIFLNLDEEDDDDDNDGGCFRDESQMVYDFDSPGSPKQSSILKVSKLMDNYLAEVALDSNLLPSKFTALAELLPDHARIVSDGLYRAVDIFLKVHPNIKDSERYRLCKSIDCQKLSQEACSHAAQNERLPVQMAVQVLYFEQMRLRNAMNGGGHHHSNSFLFGGHFPQRTGSGAGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELVKSQYPANKLFKSFTKKLSKLNSLFRLSTSTFKQSSFGASNNNAKGIAHSETHRFPFPKRRRHSVS* 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0856 630 Pfam BTB/POZ domain 16 120 IPR000210 GO:0005515
Amo16g0856 630 SUPERFAMILY POZ domain 14 103 IPR011333 -
Amo16g0856 630 MobiDBLite consensus disorder prediction 600 630 - -
Amo16g0856 630 Gene3D Potassium Channel Kv1.1; Chain A 7 125 IPR011333 -
Amo16g0856 630 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN SETH6 9 593 - -
Amo16g0856 630 Coils Coil 529 563 - -
Amo16g0856 630 PANTHER OS12G0117600 PROTEIN 9 593 IPR043454 -
Amo16g0856 630 SMART BTB_4 18 110 IPR000210 GO:0005515
Amo16g0856 630 Pfam NPH3 family 191 464 IPR027356 -
Amo16g0856 630 ProSiteProfiles BTB domain profile. 18 86 IPR000210 GO:0005515
Amo16g0856 630 ProSiteProfiles NPH3 domain profile. 191 488 IPR027356 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0856 Amo-Chr16 13792014 13794660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0856 11 438 EF-hand Containing Proteins AT2G47860 58.681 4.11e-174 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0856 - - ahf:112695833 1182.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0856 16 13792014 13794660 Amo16g0856 16 13792014 13794660 ECH
Amo16g0856 16 13792014 13794660 Amo06g0352 06 5001940 5004603 hybridization
Amo16g0856 16 13792014 13794660 Amo12g3070 12 118949865 118953479 PCT
Amo12g3070 12 118949865 118953479 Amo16g0856 16 13792014 13794660 PCT