Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0352 ATGCCAATATCTGAAGTCTCTAGTGATCTTACTATTGAAGTAGAAGACTCAAGCTTTCCACTTCACAAGTTTCCTCTAGTTTCTAGGAGTGGAAGAATCAGAAAACTGCTGCTAGAAGCAAAAGATTCMAAGGTTTCACGCATAAGTCTCCAAAATGTGCCTGGTGGTATAGATGCATTTGAGCTAGCAGCTAAATTCTGCTATGGAATAAATGTTGAATTCACTCTCTCAAACGTTGCCAAGCTACGTTGCATAGCGCATTTTCTAGAAATGACTGAAGAATTTGCTGAGAAGAACTTGGAGACTAGAGCKGAATCATATCTAAAAGAGTCAGTKCTACCAAGCATACAAAACAGCATWAGTGTTCTTCACCATTGTGAGACTCTTCTCCCAATTTCAGAAGAMATTAACCTTGTTAGCAGGTTAATCAATTCAGTTGCAAACAATGCATGCAAACAACAACTTACCTCTGGATTGCTAAAACTTGATCATACTTTAAATTCTAAGACAATCTCAAACATGGAACCAGAAACTCCCTCRGAWTGGTGGGGGAAATCTTTCAATGTTCTTGGCCTTGATTTTTTCCAGAGAGTAATTTCTGTGTTGAAATCAAAGGGKCTAAAACAAGATATGATCAGTAAGATTTTGATAAACTATGCACATAGTTCACTACAGGGGATTGCTCTTATTAGGGATCCTCAAGTTGTTAAAGGGAGTTTACYTGACTTGGAAGTAAAGAAAAAACAAAGGSTGGTYGTTGAAGCCATAGTTGGATTACTCCCTAATCAATCAAGGAAGAGCCAGGTTCCAATGGCATTCTTATCATTCCTGTTGAAGGCTGCTATCGCGGCTGGGGCCCCAACTTCTTGCAGGTGTGATTTGGAGAGGCGAATCGGCCTACAACTCGACCAGGCAATCCTAGAAGACATACTAATTCCGGCTAACTCGCTTCAGAACACACACAGCACAATATATGACACAGATTCAATCTTGAGGATTTTCTCAATTTTCCTTAACCTGGATGAGGAGGACGATGATGATGATAATGATGGTGGCTGCTTCAGAGATGAAAGCCAAATGGTGTACGACTTCGACAGCCCCGGATCGCCAAAACAAAGCTCAATCCTCAAAGTATCTAAACTGATGGATAACTATCTTGCTGAAGTAGCATTAGACTCAAACTTGTTGCCATCAAAATTCACAGCACTTGCAGAACTACTCCCAGATCATGCACGCATAGTGAGTGATGGACTCTATAGAGCAGTTGATATCTTCCTTAAGGTTCATCCAAATATAAAGGATTCAGAGAGGTACCGGTTATGCAAAAGCATAGATTGCCAGAAACTGTCTCAAGAAGCATGCAGCCATGCAGCACAGAACGAGAGGCTGCCGGTGCAAATGGCGGTTCAAGTGCTTTACTTCGAGCAAATGAGACTGCGAAACGCGATGAACGGCGGAGGACACCACCACAGCAACAGCTTCTTGTTCGGCGGCCATTTCCCTCAGCGGACGGGAAGCGGTGCCGGAAGCGGCGCCATGTCGCCGAGGGATAACTACGCGTCGGTTCGAAGGGAGAATCGAGAGCTGAAGCTGGAGGTAGCGAGAATGAGGATGAGGCTGACTGATTTGGAGAAAGACCATGTTTCCATGAAACAGGAGCTTGTGAAGTCACAATACCCCGCTAACAAGCTTTTCAAATCTTTCACGAAGAAACTAAGCAAACTCAATTCTCTCTTTCGTTTAAGCACTAGTACTTTTAAGCAATCATCRTTTGGTGCCAGTAATAATAATGCCAAAGGTATCGCTCATTCAGAAACTCATCGCTTTCCTTTTCCAAAAAGAAGACGCCACTCAGTTTCATGA 1863 0.4257 MPISEVSSDLTIEVEDSSFPLHKFPLVSRSGRIRKLLLEAKDSKVSRISLQNVPGGIDAFELAAKFCYGINVEFTLSNVAKLRCIAHFLEMTEEFAEKNLETRAESYLKESVLPSIQNSISVLHHCETLLPISEXINLVSRLINSVANNACKQQLTSGLLKLDHTLNSKTISNMEPETPSXWWGKSFNVLGLDFFQRVISVLKSKGLKQDMISKILINYAHSSLQGIALIRDPQVVKGSLXDLEVKKKQRXVVEAIVGLLPNQSRKSQVPMAFLSFLLKAAIAAGAPTSCRCDLERRIGLQLDQAILEDILIPANSLQNTHSTIYDTDSILRIFSIFLNLDEEDDDDDNDGGCFRDESQMVYDFDSPGSPKQSSILKVSKLMDNYLAEVALDSNLLPSKFTALAELLPDHARIVSDGLYRAVDIFLKVHPNIKDSERYRLCKSIDCQKLSQEACSHAAQNERLPVQMAVQVLYFEQMRLRNAMNGGGHHHSNSFLFGGHFPQRTGSGAGSGAMSPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELVKSQYPANKLFKSFTKKLSKLNSLFRLSTSTFKQSSFGASNNNAKGIAHSETHRFPFPKRRRHSVS* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0352 620 ProSiteProfiles BTB domain profile. 8 76 IPR000210 GO:0005515
Amo06g0352 620 SMART BTB_4 8 100 IPR000210 GO:0005515
Amo06g0352 620 MobiDBLite consensus disorder prediction 590 620 - -
Amo06g0352 620 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN SETH6 3 583 - -
Amo06g0352 620 ProSiteProfiles NPH3 domain profile. 181 478 IPR027356 -
Amo06g0352 620 Coils Coil 519 553 - -
Amo06g0352 620 PANTHER OS12G0117600 PROTEIN 3 583 IPR043454 -
Amo06g0352 620 Pfam BTB/POZ domain 6 110 IPR000210 GO:0005515
Amo06g0352 620 Gene3D Potassium Channel Kv1.1; Chain A 3 115 IPR011333 -
Amo06g0352 620 Pfam NPH3 family 182 454 IPR027356 -
Amo06g0352 620 SUPERFAMILY POZ domain 4 93 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0352 Amo-Chr6 5001940 5004603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0352 2 428 EF-hand Containing Proteins AT2G47860 58.150 4.87e-170 491
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0352 - - ahf:112695833 1176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0856 16 13792014 13794660 Amo06g0352 06 5001940 5004603 hybridization
Amo06g0352 06 5001940 5004603 Amo12g3070 12 118949865 118953479 PCT
Amo12g3070 12 118949865 118953479 Amo06g0352 06 5001940 5004603 PCT