Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g3070 ATGGGAGTGGTAACAGTTGGTGAATTGAAGCCTAGCATTTCAGGAAAAAGAACCTTCCGTCCAAGTTCAAGCATAAGGCATGCCACTGAATGGCCAATTTCTGATGTATCTAGTGATTTTACAATTGAAGTTGGATCTTCAAGCTTTGCACTTCACAAGTTTCCTCTGGTTTCTAAGAGTGGAAGAATAAGGAAACTGCTGTTAGAGGCTAAAGACTCGAAGGTTTCGCGCATAAGTCTGGCGAACGTGCCGGGCGGCCTAGAATCGTTCGAGCTAGCTGCGAAATTCTGCTATGGAATCAATCTTGAATTAACACTCTCCAATGTTGCTATTCTAAAATGTGTATCACACTTTCTTGAAATGACAGAGGAGTATGCAGAGAAGAACTTGGAAACAAGAGTTGAATCATATCTAAAGGATACCGTTCTACCTAACACATCAAGCACCATAACCGTGCTTCATCGCTGCGAAAMTCTTCTTCCATACTCAGAAGAGATCAACCTTGTTAGCAGGCTAATCAAYGCGATTGCGAATAATGCATGTAAAGARCAGCTTACCTCTGGATTGTTGAAATTGGATCATAACTTCCCTTCCAAGACTATTTCTAGCATGGAACCRGAGACGCCGTCGGATTGGTGGGGGAAGTCTCTCAATATTCTTAGCCTTGAATTCTTCCAGAGAGTTCTGACGGCCGTGAAGTCGAAGGGACTAAAACAAGAAATGATCAGCAAGATCTTGATAAATTACGCGCACAATTCGCTTCAGGGGATTGTTAGTATTAGCAAGGATCCTCAATTTTTCAAGGGAAGTTCATCTGACTTGGAGTTGCAAAAGAGACAGAGGATAATTGTGGAAGCCATTGTTAGCTTGCTGCCTACGCAATCAAGGAAAAGTCCCGTTCCAATGGCGTTTCTATCCAGTTTGTTGAAGGCTGCAATTGCTGTGTTCGCTTCTTCGTCGTGCAGATCCGATCTGGAGAGAAGGATTGGCCTACAGCTTGATCAGGCAATCCTTGAAGACATACTAATTCCGACAAATTCGCAGCAAAATTTGCAGAACACAGCAATAATGTATGACATAGATTCAATTGTGAGGATATTTTCCATTTTCTTGAACTTGGATGAGGAGGAGGAGGATGATAATCGAATGCGAGACGAAAGCGAAATGGTTTATGACTATGACAGTCCTGGATCTCCAAAACAAAGCTCAATTATTAAGGTCTCAAAATTGCTGGACAATTTTCTAACCGAAGTAGCACTCGATCCAAACTTGTCACCATCCAAGTTTATATCGCTTGCAGAGCTACTTCCAGATCACGCCAGAGTAGTTAGTGATGGACTCTATAGAGCTGTTGATATCTTCCTTAAGGTTCATCCAAACATAAAGGACTCAGATCGATACCGTCTTTGCAAGGCCATTGATTGTCAGAAACTGACTCAAGAAGCATGCAGCCATGCAGCGCAAAACGAAAGGCTGCCGGTACAAATGGCGGTTCAAGTTCTTTACTTCGAGCAAATCCGGCTGCGAAACGCAATGAACGGAGGACACAACCAGATCTTCTTCGGCGGAGGATTCAACGGCCAGTTCCCTCAACGCTCGGGGAGCGGAGCAGGAAGCGGAGCCATTTCTCCGCGAGACAACTACGCTTCGGTGCGAAGAGAGAACCGGGAGCTGAAGCTGGAGGTTGCGAGAATGCGAATGAGGCTAACTGATTTGGAGAAAGATCACGTTTCAATGAAGCAGGGGCTTGTAAAGACACGCTCTGCAAGCAGGCTATTCAAATCATTGTCAAGAAAACTTAGCAAAATTAATATTCTATTTAGGATATCTAGCATTAAGCCAAATGGTGCTAGTTCAGAAAGCAGATTCCCTTTCCCTAGGAGAAGGCGTCACTCAGTTTCATGA 1905 0.4378 MGVVTVGELKPSISGKRTFRPSSSIRHATEWPISDVSSDFTIEVGSSSFALHKFPLVSKSGRIRKLLLEAKDSKVSRISLANVPGGLESFELAAKFCYGINLELTLSNVAILKCVSHFLEMTEEYAEKNLETRVESYLKDTVLPNTSSTITVLHRCEXLLPYSEEINLVSRLINAIANNACKEQLTSGLLKLDHNFPSKTISSMEPETPSDWWGKSLNILSLEFFQRVLTAVKSKGLKQEMISKILINYAHNSLQGIVSISKDPQFFKGSSSDLELQKRQRIIVEAIVSLLPTQSRKSPVPMAFLSSLLKAAIAVFASSSCRSDLERRIGLQLDQAILEDILIPTNSQQNLQNTAIMYDIDSIVRIFSIFLNLDEEEEDDNRMRDESEMVYDYDSPGSPKQSSIIKVSKLLDNFLTEVALDPNLSPSKFISLAELLPDHARVVSDGLYRAVDIFLKVHPNIKDSDRYRLCKAIDCQKLTQEACSHAAQNERLPVQMAVQVLYFEQIRLRNAMNGGHNQIFFGGGFNGQFPQRSGSGAGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVSMKQGLVKTRSASRLFKSLSRKLSKINILFRISSIKPNGASSESRFPFPRRRRHSVS* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g3070 634 ProSiteProfiles NPH3 domain profile. 211 507 IPR027356 -
Amo12g3070 634 Gene3D Potassium Channel Kv1.1; Chain A 24 146 IPR011333 -
Amo12g3070 634 SUPERFAMILY POZ domain 22 123 IPR011333 -
Amo12g3070 634 Coils Coil 632 634 - -
Amo12g3070 634 Coils Coil 548 575 - -
Amo12g3070 634 Pfam NPH3 family 211 483 IPR027356 -
Amo12g3070 634 PANTHER OS12G0117600 PROTEIN 25 627 IPR043454 -
Amo12g3070 634 PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN SETH6 25 627 - -
Amo12g3070 634 ProSiteProfiles BTB domain profile. 38 106 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g3070 Amo-Chr12 118949865 118953479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g3070 1 457 EF-hand Containing Proteins AT2G47860 59.509 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g3070 - - gmx:100814622 978.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0856 16 13792014 13794660 Amo12g3070 12 118949865 118953479 PCT
Amo06g0352 06 5001940 5004603 Amo12g3070 12 118949865 118953479 PCT
Amo12g3070 12 118949865 118953479 Amo16g0856 16 13792014 13794660 PCT
Amo12g3070 12 118949865 118953479 Amo06g0352 06 5001940 5004603 PCT