Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0398 ATGGGGTCCGAAGGTCCTCCATCAGCAAAGATAACAACAATTCATGTGACAGGATTTAAAAAGTTCCATGGGGTTTTAGAGAATCCAACAGAAATAATTGTCAATAATTTGACAGAATATATGAACAAGAAGACTTTGCCAAAATGTTTAACTATTGGGAGCTGCACCATTCTTGAGACCGCAGGTGAAGGAGCACTTGTTCCACTCTACCAGACCTTACAATCTGCCCTTATTGTTCCACAAGACTCTCAATCTGAATCTTCAAATTCCAACCGAATTATTTGGCTTCATTTTGGGGTTAATAGTGGTGCAACAAGGTTTGCTATAGAGAAGCAAGCTTTCAATGAAGCTAATTTCCGTTGCCCTGATGAAATGGGATGGAAGCCCCAGAGAGTCCCAATTGTTCCTTCAGATGGTGAAATTTCACGAACACGTCAGACTTCGCTTCCTGTTGTGGAGATCACCAAGGCATTGGCACAGAAGGAATATGATGTTATCCTATCGGATGATGCAGGCAGGTTTGTATGCAATTATGTTTACTACCATTCCCTTCGTTTTGCAGAGCAGAACGGGATTAAATCTCTTTTTGTTCATGTGCCACTCTTCTCAACAATAAATGAAGAAACTCAAATGCAATTTGCTTCTTCCTTGTTAGAGGTACTTGCTTCTATATGTTAA 678 0.4027 MGSEGPPSAKITTIHVTGFKKFHGVLENPTEIIVNNLTEYMNKKTLPKCLTIGSCTILETAGEGALVPLYQTLQSALIVPQDSQSESSNSNRIIWLHFGVNSGATRFAIEKQAFNEANFRCPDEMGWKPQRVPIVPSDGEISRTRQTSLPVVEITKALAQKEYDVILSDDAGRFVCNYVYYHSLRFAEQNGIKSLFVHVPLFSTINEETQMQFASSLLEVLASIC* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0398 225 PANTHER BNAA09G15240D PROTEIN 1 224 - -
Amo16g0398 225 PANTHER PROTEASE FAMILY C15 PYROGLUTAMYL-PEPTIDASE I-RELATED 1 224 IPR016125 -
Amo16g0398 225 CDD Peptidase_C15 13 223 IPR000816 GO:0005829|GO:0006508|GO:0016920
Amo16g0398 225 SUPERFAMILY Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) 13 223 IPR036440 -
Amo16g0398 225 PIRSF Pyrrolidone-crbxlat_pptds 11 225 IPR000816 GO:0005829|GO:0006508|GO:0016920
Amo16g0398 225 Gene3D - 10 224 IPR036440 -
Amo16g0398 225 Pfam Pyroglutamyl peptidase 93 203 IPR016125 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0398 Amo-Chr16 6486441 6489167 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0398 K01304 - gmx:100789152 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0398 16 6486441 6489167 Amo16g0398 16 6486441 6489167 ECH
Amo16g0398 16 6486441 6489167 Amo19g1410 19 30528438 30531582 PCT
Amo16g0398 16 6486441 6489167 Amo09g0843 09 15157102 15160163 PCT
Amo19g1410 19 30528438 30531582 Amo16g0398 16 6486441 6489167 PCT
Amo09g0843 09 15157102 15160163 Amo16g0398 16 6486441 6489167 PCT