Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0055 ATGGCGTCGCCCTTCATCTTCCTAATTTTCTTCTTCATATTCAGAGTGCATCATGCTATATTGGATCCCAATGATTTCTTGGCTCTTCAATCTATTCGTAAATCGCTTCACGATGTTCCTGGCTCTAACTTCTTTTCTTCTTGGGACTTCACCTCTGATCCATGCACATTCTCCGGCGTCTTCTGCCATGCCGACAGAGTCGTCGCTCTAAACCTTGGCGATCCCCGCGCCGGCTCCCCCGGCCTCACCGGAAAACTTGACCCCGCACTCTCCAAGCTCTCCGCTCTCGCCGAATTAACCGTCGTCCCCGGCCGAATCTACGGCCATCTCCCGCCCTCTCTCTCTGCACTTACCAATCTCCGATTCCTTGGCATTAGTCGTAATTTCATCTCCGGCGACATTCCGGCAGGTTTAGGCAACCTTCGCAGCCTGAGAACTCTCGATCTCAGCTACAACCAGCTCTCCGGAACAATCCCTCCGGCGATTGGAAACCTCCCGGAGCTCGTCAACGTCGTCCTCTGCCATAACCGTCTAACCGGTTCGGTTCCCAGATTCTCATCTCAAACGCTAACCCGGCTCGATCTGAAACATAACACTCTCTCCGGTTCGATCGAACCGGATTCCCTCCCTCCCTCACTCCACTACCTCTCCCTCTCATGGAACTGGTTCACTGGACCGGTAGACCGGTTACTAAGCAGGCTCAACCAGCTAAACTACCTCGACCTAAGCCTGAACCGGTTCACCGGTTCAATTCCAGCTCAACTCTTTACGTACCCCCTAACAAACCTCCAGCTCGAGAGGAACCAGTTCTCGGGTCCGGTCCAACCGGTCAACGACGTTTCGATCCAGACCGTTGATCTTAGCTATAACAGATTCTCCGGTGAGATATCGCCCATGCTGGCGAACGTGCAGTATCTTTACCTGAACAACAACGGGTTTTCCGGGCAGGTCCCTGCCAGCTTCGTTGATCGGTTGCTGGCGGCGAGTATAGAGATTCTTTATCTGCAGCATAATTACCTGACCGGAATAGCGATAAGTCCCACGGCGGAGATTCCGGTGAGCAGCTCGCTTTGCGTTCAGTATAACTGTATGGTGCCGCCGGTGCAGACGGGGTGTCCGGTGAGGTCCGGGACGCAGAAGATTCGGCCTGCTGAGGAGTGCAATCAATGGAGGGGATGA 1179 0.5394 MASPFIFLIFFFIFRVHHAILDPNDFLALQSIRKSLHDVPGSNFFSSWDFTSDPCTFSGVFCHADRVVALNLGDPRAGSPGLTGKLDPALSKLSALAELTVVPGRIYGHLPPSLSALTNLRFLGISRNFISGDIPAGLGNLRSLRTLDLSYNQLSGTIPPAIGNLPELVNVVLCHNRLTGSVPRFSSQTLTRLDLKHNTLSGSIEPDSLPPSLHYLSLSWNWFTGPVDRLLSRLNQLNYLDLSLNRFTGSIPAQLFTYPLTNLQLERNQFSGPVQPVNDVSIQTVDLSYNRFSGEISPMLANVQYLYLNNNGFSGQVPASFVDRLLAASIEILYLQHNYLTGIAISPTAEIPVSSSLCVQYNCMVPPVQTGCPVRSGTQKIRPAEECNQWRG* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0055 392 PRINTS Leucine-rich repeat signature 144 157 - -
Amo16g0055 392 PRINTS Leucine-rich repeat signature 234 247 - -
Amo16g0055 392 Gene3D Ribonuclease Inhibitor 188 278 IPR032675 -
Amo16g0055 392 Gene3D Ribonuclease Inhibitor 24 187 IPR032675 -
Amo16g0055 392 Gene3D Ribonuclease Inhibitor 279 365 IPR032675 -
Amo16g0055 392 SMART LRR_typ_2 141 165 IPR003591 -
Amo16g0055 392 SMART LRR_typ_2 300 323 IPR003591 -
Amo16g0055 392 SMART LRR_typ_2 234 258 IPR003591 -
Amo16g0055 392 PANTHER LRR RECEPTOR-LIKE KINASE 5 389 - -
Amo16g0055 392 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 5 389 - -
Amo16g0055 392 SUPERFAMILY L domain-like 45 363 - -
Amo16g0055 392 Pfam Leucine Rich repeat 187 202 IPR001611 GO:0005515
Amo16g0055 392 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515
Amo16g0055 392 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0055 Amo-Chr16 809816 811088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0055 8 342 Receptor kinase-like Gene Family AT5G62230 29.971 4.98e-37 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0055 - - gmx:100817314 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0055 16 809816 811088 Amo16g0055 16 809816 811088 ECH
Amo16g0055 16 809816 811088 Amo06g0441 06 6268341 6269680 hybridization
Amo16g0055 16 809816 811088 Amo12g3020 12 117830964 117832932 PCT
Amo12g3020 12 117830964 117832932 Amo16g0055 16 809816 811088 PCT