Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0441 ATGGCATCGCCCTTCATCTTCCTAATTTTCTTCTTCATATTCAGAGTGCATCATGCTATATTGGATCCCAATGATTTCTTGGCTCTTCAATCTATTCGTAAATCGCTTCACGATGTTCCCGGCTCTAACTTCTTTTCTTCTTGGGACTTCACCTCTGATCCATGCACATTCTCCGGCGTCTTCTGCCATGCCGATAGAGTTGTTGCTCTAAACCTTGGCGATCCCCGCGCCGGCTCCCCCGGCCTCACCGGAAAACTTGACCCCGCACTCTCAAAGCTCTCCGCTCTCGCCGAATTAACAGTCGTCCCCGGCCGAATCTACGGCCATCTCCCGCCCTCTCTCTCTGCACTTACCAATCTCCGATTCCTTGGCATTAGTCGTAATTTCGTCTCCGGCGACATTCCGGCAGGTTTAGGCAACCTTCGCAACCTCAGAACTCTCGATCTCAGCTACAACCAGCTCTCCGGAACAATCCCCCCGGCGATTGGAAACCTCCCGGAGCTCGTCAACGTCGTCCTCTGCCATAACCGTCTCACCGGTTCGGTTCCCAAATTCTCATCTCAAACGCTAACCCGGCTCGATCTGAAACATAACACTCTCTCCGGTTCGATCGAACCGGATTCCCTCCCTCCCTCACTCCACTACCTCTCCCTCTCATGGAATTGGTTCACTGGACCGGTAGACCGGTTACTAAGCAGGCTCAACCAGCTAAACTACCTCGACCTAAGCCTGAACCGGTTCACCGGTTCAATTCCAGCTCAACTCTTTACGTACCCCCTCACAAACCTCCAGCTCGAGAGGAACCAGTTCTCGGGTCCGGTCCAACCGGTCAACGACGTTTCGATCCAGACCGTTGATCTTAGCTATAACAGATTCTCCGGTGAGATATCGCCCATGCTGGCGAACGTGCAGTATCTTTACCTGAACAACAACGGGTTTTCCGGGCAGGTCCCTGCCAGCTTCGTTGACCGGTTGCTGGCGGCGAGTATAGAGATTCTTTATCTGCAGCATAATTACCTGACCGGAATAGCGATAAGTCCCACGGCGGAGATCCCGGTGAGCAGCTCGCTTTGCGTTCAGTATAACTGTATGGTGCCGCCGGTGCAGACGGGGTGTCCGGTGAGGTCCGGGACGCAGAAGATTCGGCCTGCTGAGGAGTGCAATCAATGGAGGGGATGA 1179 0.5377 MASPFIFLIFFFIFRVHHAILDPNDFLALQSIRKSLHDVPGSNFFSSWDFTSDPCTFSGVFCHADRVVALNLGDPRAGSPGLTGKLDPALSKLSALAELTVVPGRIYGHLPPSLSALTNLRFLGISRNFVSGDIPAGLGNLRNLRTLDLSYNQLSGTIPPAIGNLPELVNVVLCHNRLTGSVPKFSSQTLTRLDLKHNTLSGSIEPDSLPPSLHYLSLSWNWFTGPVDRLLSRLNQLNYLDLSLNRFTGSIPAQLFTYPLTNLQLERNQFSGPVQPVNDVSIQTVDLSYNRFSGEISPMLANVQYLYLNNNGFSGQVPASFVDRLLAASIEILYLQHNYLTGIAISPTAEIPVSSSLCVQYNCMVPPVQTGCPVRSGTQKIRPAEECNQWRG* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0441 392 PRINTS Leucine-rich repeat signature 144 157 - -
Amo06g0441 392 PRINTS Leucine-rich repeat signature 234 247 - -
Amo06g0441 392 Gene3D Ribonuclease Inhibitor 188 258 IPR032675 -
Amo06g0441 392 Gene3D Ribonuclease Inhibitor 260 365 IPR032675 -
Amo06g0441 392 PANTHER LRR RECEPTOR-LIKE KINASE 5 389 - -
Amo06g0441 392 Gene3D Ribonuclease Inhibitor 24 187 IPR032675 -
Amo06g0441 392 Pfam Leucine rich repeat 119 178 IPR001611 GO:0005515
Amo06g0441 392 SUPERFAMILY L domain-like 45 363 - -
Amo06g0441 392 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Amo06g0441 392 ProSiteProfiles Leucine-rich repeat profile. 143 166 IPR001611 GO:0005515
Amo06g0441 392 Pfam Leucine Rich repeat 187 202 IPR001611 GO:0005515
Amo06g0441 392 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 5 389 - -
Amo06g0441 392 SMART LRR_typ_2 141 165 IPR003591 -
Amo06g0441 392 SMART LRR_typ_2 234 258 IPR003591 -
Amo06g0441 392 SMART LRR_typ_2 300 323 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0441 Amo-Chr6 6268341 6269680 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0441 8 342 Receptor kinase-like Gene Family AT5G62230 29.683 2.07e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0441 - - gmx:100817314 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0055 16 809816 811088 Amo06g0441 06 6268341 6269680 hybridization
Amo06g0441 06 6268341 6269680 Amo12g3020 12 117830964 117832932 PCT
Amo12g3020 12 117830964 117832932 Amo06g0441 06 6268341 6269680 PCT