Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo16g0018 ATGGCACAAAAACTCTTGGCAGCTTTCCTCCTCCTCCTCTTCTCCGCCGCCATCACCGTCTCTTCAGCTCAGAAATCATTCAGACCAAAAGCATTGGTCATCCCAATCAAGAAGGACACTTCCACAAACCAGTACCTCACAACAATCCGGCAGCGCACCCCTCTCGTCCCTGTCTCCCTCGTCCTTGACCTCGGCGGCCAGTTCCTCTGGGTCGACTGCGACAAAAACTACGTCTCCTCCACCTACCGCCCCGCCCGCTGCGGCTCCGCCCAGTGCTCCCTCGCCGGCTCCACCTCCTGCGGCACCTGCAACGCCCCTCCCCGCCCAGGATGCAACAACAACACCTGCGGCCTCATACCGGACAACACCATCACCCACACCGCCACCGGCGGCGAGCTCGCCGAAGACGCCGTGTCCGTACAGTCCACTAACGGCTTCAATCCTGGCCAAAACGTCACCGTTTCGCGCTTCCTCTTCTCCTGCGCCCCCACTTTCCTCCTCAAAGGCCTCGCTAGCGGCGTCTCCGGAATGGCGGGTCTCGGAAGGACGAAAATCGCACTTCCCACGCAGTTCGCCTCCGCTTTCAGCTTCGCCAGAAAATTCGCCGTTTGCTTATCCTCAAACGGCGTCGTTTTCTTCGGAGATGGACCGTACGGTTTCCTCCCGAACGTTGAGTACGATTCGAAATCTCTAACCTACACACCTCTCTTCATCAACCCCGTGAGCACCGCCTCCGCTTACTCCCAAGGAGAACCCTCCGCTGAGTACTTCATCGGCGTGAGTTCCATTAAAGTTGACCAAAATGTGGTCAAAGTCAAATCCAGCTTGTTGACCATCAACAAGACCAGCGGCGTGGGTGGAACGAAGATCAGCACTGTAAACCCTTACACGGTTCTAGAAGATTCGATCTTCAACGCCTTGGTTAAGTCCTTCGTGAATGCCTCGGCTGCAAGGAACATAACAAGGGTGGCTTCGGTGAAGCCGTTCGGAGCATGCTTCAGCACGGAGAACGTGTTCAGCACGCGCTTGGGGTACGCGGTTCCAACAATCGAACTCGTTCTTGAAAACGCGAAATTGAGTTGGAGCATATTCGGTGCTAACTCGGTGGTTCAAGTGAGTGATAAAGTGATATGTCTTGGGTTCGTGAACGGTGGGAAGAACCCTACAACCTCCATCGTGATCGGAGGGTATCAGTTAGAGAACAATCTTTTGCAGTTCGATCTGGCTGCTTCCAGATTGGGATTCAGCTCTTTGCTCTTCGGAAGACAAACCACGTGTTCCAACTTCAATTTCACCTCCACCGCTTAA 1308 0.5482 MAQKLLAAFLLLLFSAAITVSSAQKSFRPKALVIPIKKDTSTNQYLTTIRQRTPLVPVSLVLDLGGQFLWVDCDKNYVSSTYRPARCGSAQCSLAGSTSCGTCNAPPRPGCNNNTCGLIPDNTITHTATGGELAEDAVSVQSTNGFNPGQNVTVSRFLFSCAPTFLLKGLASGVSGMAGLGRTKIALPTQFASAFSFARKFAVCLSSNGVVFFGDGPYGFLPNVEYDSKSLTYTPLFINPVSTASAYSQGEPSAEYFIGVSSIKVDQNVVKVKSSLLTINKTSGVGGTKISTVNPYTVLEDSIFNALVKSFVNASAARNITRVASVKPFGACFSTENVFSTRLGYAVPTIELVLENAKLSWSIFGANSVVQVSDKVICLGFVNGGKNPTTSIVIGGYQLENNLLQFDLAASRLGFSSLLFGRQTTCSNFNFTSTA* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo16g0018 435 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 8 435 - -
Amo16g0018 435 Pfam Xylanase inhibitor N-terminal 45 215 IPR032861 -
Amo16g0018 435 Pfam Xylanase inhibitor C-terminal 255 416 IPR032799 -
Amo16g0018 435 Gene3D Acid Proteases 216 433 IPR021109 -
Amo16g0018 435 ProSiteProfiles Peptidase family A1 domain profile. 45 416 IPR033121 -
Amo16g0018 435 PANTHER ASPARTYL PROTEASE-RELATED 8 435 IPR001461 GO:0004190|GO:0006508
Amo16g0018 435 SUPERFAMILY Acid proteases 37 426 IPR021109 -
Amo16g0018 435 Gene3D Acid Proteases 29 215 IPR021109 -
Amo16g0018 435 CDD xylanase_inhibitor_I_like 51 419 IPR033868 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo16g0018 Amo-Chr16 366165 367472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo16g0018 18 417 Miscellaneous Gene Families AT1G44130 22.038 1.10e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo16g0018 - - gmx:100797018 639.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0018 16 366165 367472 Amo16g0018 16 366165 367472 ECH
Amo16g0018 16 366165 367472 Amo06g0484 06 6799497 6801307 hybridization
Amo16g0018 16 366165 367472 Amo12g2941 12 116624125 116627053 PCT
Amo12g2941 12 116624125 116627053 Amo16g0018 16 366165 367472 PCT