Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo06g0484 ATGGCACAAAAACTCTTGGCAGCTTTCCTCCTCCTCCTCTTCTCCGCCGCCATCACCGTCTCTTCAGCTCAGAAATCATTCAGACCAAAAGCATTGGTWATCCCAATCAAGAAGGACACTTCCACAAARCAGTACCTCACAACAATCCGGCAGCGCACCCCTCTCGTCCCRGTCTCCCTCGTCCTRGACCTCGGCGGCCAGTTRCTCTGGGTCGACTGCGACAAAAACTACGTCTCCTCCACCTACCGCCCCGCCCGCTGCGGCTCCGCCCAGTGCTCCCTCGCCGGCTCCACCTCCTGCGGCACCTGCAACGCCCCTCCCCGCCCAGGATGCAACAACAACACCTGCGGCCTCATACCGGACAACACCATCACCCACACCGCCACCGGCGGCGAGCTCGCCGAAGACGCCGTGTCCGTACAGTCCACTAACGGCTTCAATCCTGGCCAAAACGTCACCGTTTCGCGCTTCCTCTTCTCCTGCGCCCCCACTTTCCTCCTCAAAGGCCTCGCTAGCGGCGTCTCCGGAATGGCGGGTCTCGGAAGGACGAAAATCGCACTTCCCACGCAGTTCGCCTCCGCTTTCAGCTTCGCCAGAAAATTCGCCGTTTGCTTATCCTCAAACGGCGTCGTTTTCTTCGGAGATGGACCGTACGGTTTCCTCCCGAACGTRGAGTACGATTCGAAATCRCTAACCTACACACCTCTCTTCATCAACCCCGTGAGCACCGCCTCCGCTTACTCCCAAGGAGAACCCTCCGCTGAGTACTTCATCGGCGTGAGTTCCATTAAAGTTGACCAAAARGTGGTCAAAGTCAAATCCAGCTTGTTGACCATCAACAAGACCAGCGGCGTGGGTGGAACWAAGATCAGCACTGTAAACCCTTACACGGTTCTAGAAGATTCGATCTTCAACGCCTTGGTTAAGTCCTTCGTGAATGCCTCGGCTGCAAGGAACATAACAAGGGTGGCTTCGGTGAAGCCGTTCGGAGCATGCTTCAGCACGGAGAACGTGTTCAGCACGCGCTTWGGGTACGCGGTTCCAACAATCGAYCTRGTTCTTGAAAACGCGAAATTGAGTTGGAGCATATTCGGTGCTAACTCGGTGGTTCAAGTGAGTGATAAAGTGATATGTCTTGGGTTCGTGAACGGTGGGAAGAACCCTACAACCTCCATCGTGATCGGAGGGTATCAGTTAGAGAACAATCTTTTGCAGTTCGATCTGGCTGCTTCCAGATTGGGATTCAGCTCTTTGCTCTTCGGAAGACAAACCACGTGTTCCAACTTCAATTTCACCTCCACCGCTTAA 1308 0.5436 MAQKLLAAFLLLLFSAAITVSSAQKSFRPKALVIPIKKDTSTKQYLTTIRQRTPLVPVSLVLDLGGQLLWVDCDKNYVSSTYRPARCGSAQCSLAGSTSCGTCNAPPRPGCNNNTCGLIPDNTITHTATGGELAEDAVSVQSTNGFNPGQNVTVSRFLFSCAPTFLLKGLASGVSGMAGLGRTKIALPTQFASAFSFARKFAVCLSSNGVVFFGDGPYGFLPNVEYDSKSLTYTPLFINPVSTASAYSQGEPSAEYFIGVSSIKVDQKVVKVKSSLLTINKTSGVGGTKISTVNPYTVLEDSIFNALVKSFVNASAARNITRVASVKPFGACFSTENVFSTRXGYAVPTIDLVLENAKLSWSIFGANSVVQVSDKVICLGFVNGGKNPTTSIVIGGYQLENNLLQFDLAASRLGFSSLLFGRQTTCSNFNFTSTA* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo06g0484 435 SUPERFAMILY Acid proteases 37 426 IPR021109 -
Amo06g0484 435 Gene3D Acid Proteases 29 215 IPR021109 -
Amo06g0484 435 Pfam Xylanase inhibitor N-terminal 45 215 IPR032861 -
Amo06g0484 435 Pfam Xylanase inhibitor C-terminal 255 416 IPR032799 -
Amo06g0484 435 ProSiteProfiles Peptidase family A1 domain profile. 45 416 IPR033121 -
Amo06g0484 435 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 8 435 - -
Amo06g0484 435 CDD xylanase_inhibitor_I_like 51 419 IPR033868 -
Amo06g0484 435 Gene3D Acid Proteases 216 433 IPR021109 -
Amo06g0484 435 PANTHER ASPARTYL PROTEASE-RELATED 8 435 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo06g0484 Amo-Chr6 6799497 6801307 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo06g0484 18 417 Miscellaneous Gene Families AT1G44130 22.381 5.06e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo06g0484 - - pop:7480705 625.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g0018 16 366165 367472 Amo06g0484 06 6799497 6801307 hybridization
Amo06g0484 06 6799497 6801307 Amo12g2941 12 116624125 116627053 PCT
Amo12g2941 12 116624125 116627053 Amo06g0484 06 6799497 6801307 PCT