Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo15g0299 ATGGAGTTTTTCACCAAGGCAAAAGCCGTTAAGCTCCGCAGCCACCTCGACAAGTACCTCGTGGCGGACCGGGACCTCGAGAAGGTCCACCAGAGCCGAAAAGGCGACACAAGAAGGGCCAAATGGATCGTTGAAGTCGTGAATGATGACGACATCAACGGCGGCGGAGGCAGCCACCGCGTCCGGCTGAGGAGCTGCCACGGGAGGTATCTTGCCGCTACGGAAACCCCTTTCCTCCTTGGGATGACCGGAAACAGGGTGGTCCAGGCAGAGTTTGACAACAGCCTCAGTTGGAAGTTCGAGTGGGAACCGGTTCGAGACGGTTTCCAGGTCAGGCTCCGGAGCTGGTGCGGGAAGTTTCTCAGAGGGAACGGTGCGACTCTTCCGTGGAGGAACACCGTCACTCACGACGACCCTGTTGCAGGAATTTCAAGTGGTTGGGTCCTATGGGATGTTGAGGCCGTGGAATTGCCGGAAGAAGAGGAAGATGATGAGGTGGATGAGTATGCTTCTTTGGCTTTCTCCGATGAGTTTTCCGCCCCTTCAGACCCGTCATCGCCGATGTCCGTTTTCTCCCTCAAGTCTCCGCCAGTGAGGCAGGCCTCCAAGTTGGGTCAGAAAACGACCTCAAACAACAAATTCCGAAACGGCATGGATTTCTTCCGGCACGCAAAGGCGGTGCGCCTCCGCAGCCACCATGACAAGTACCTCATAGCGGAGGACGACGAGGAAACCGTTACGCAGGACCGCAACGGTGCCTCCAAGAGTGCCAGGTGGCACGTAGAGTACGTGGACAGTTACGACAACATAATCCGCCTCAAAAGCTGTTACGGAAAGTACCTAACCGCCTCAACAAACCCGTTCCTCCTTGGCATGACGGGGAGGAAGGTTCTCCAGACGCTACCTTCCAGATTGGACTCTTCAGTTGAATGGGAACCGGTTAAGGACGGTGGGCGCGTGAAGCTGAAGACGCGCTATGGGAACTTTTTGAGGGCAAATGGTGGTGTTCCTCCGTGGAGGAACTCCGTGACTCATGATATTCCGCATAGGACGGCCACGCAGGATTGGGTTCTTTGGGATGTTGATGTGGTGGAGATTCATGTTCGTCACTCTCCGACGACTCAGAAGAATGAAGAGATGGCGGCGGTGCTGGAGAATCTCAAGCAGCCTTCTGCTCCGCCGTTGCCGAGAGCGGAGGAGGAGGAGGAGAATCTTGATGAGAGGTTTGGAATGAGCAACGCCCCGTCATCTCGTAAGCACGCCAAGTCTGGAAGCTTCTTGAGGCAGTGGAGTAATATGAGTGGCGGGTCGTCACCCAAGGTGGAAGGAAGAACCATATACTACCATGTTGCTGAAGACAATGGAGAAGTAACTGATGAAGGCGCAGGGTATTCCTTGAATTTCAAGGGTAATGGAGTTGAAGAACTAACTCGTAAGTTTGAGGAAGAGACAGGTCTAGAGGGTATCATTGTGTGTAATAGGAGTCCATTGAATGGAAAACTATATCCTCTTCGCTTGCAGCTTCCTCCAAACAATGTTACCATGCAAGTTGTCCTTGTTCTTCCTTATTCACAAGTGGCAAGAGACTTTGAGGCACAAGGTTTAATTTGA 1611 0.532 MEFFTKAKAVKLRSHLDKYLVADRDLEKVHQSRKGDTRRAKWIVEVVNDDDINGGGGSHRVRLRSCHGRYLAATETPFLLGMTGNRVVQAEFDNSLSWKFEWEPVRDGFQVRLRSWCGKFLRGNGATLPWRNTVTHDDPVAGISSGWVLWDVEAVELPEEEEDDEVDEYASLAFSDEFSAPSDPSSPMSVFSLKSPPVRQASKLGQKTTSNNKFRNGMDFFRHAKAVRLRSHHDKYLIAEDDEETVTQDRNGASKSARWHVEYVDSYDNIIRLKSCYGKYLTASTNPFLLGMTGRKVLQTLPSRLDSSVEWEPVKDGGRVKLKTRYGNFLRANGGVPPWRNSVTHDIPHRTATQDWVLWDVDVVEIHVRHSPTTQKNEEMAAVLENLKQPSAPPLPRAEEEEENLDERFGMSNAPSSRKHAKSGSFLRQWSNMSGGSSPKVEGRTIYYHVAEDNGEVTDEGAGYSLNFKGNGVEELTRKFEEETGLEGIIVCNRSPLNGKLYPLRLQLPPNNVTMQVVLVLPYSQVARDFEAQGLI* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo15g0299 536 PANTHER CROSS-LINKING PROTEIN, PUTATIVE (DUF569)-RELATED 212 522 - -
Amo15g0299 536 PANTHER CROSS-LINKING PROTEIN, PUTATIVE (DUF569)-RELATED 1 201 - -
Amo15g0299 536 Pfam Domain of unknown function (DUF569) 1 150 IPR007679 -
Amo15g0299 536 Pfam Domain of unknown function (DUF569) 218 359 IPR007679 -
Amo15g0299 536 Gene3D - 5 139 - -
Amo15g0299 536 Gene3D - 226 346 - -
Amo15g0299 536 SUPERFAMILY Actin-crosslinking proteins 221 364 IPR008999 -
Amo15g0299 536 MobiDBLite consensus disorder prediction 416 439 - -
Amo15g0299 536 SUPERFAMILY Actin-crosslinking proteins 6 155 IPR008999 -
Amo15g0299 536 MobiDBLite consensus disorder prediction 388 439 - -
Amo15g0299 536 PANTHER ACTIN CROSS-LINKING PROTEIN (DUF569) 212 522 - -
Amo15g0299 536 PANTHER ACTIN CROSS-LINKING PROTEIN (DUF569) 1 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo15g0299 Amo-Chr15 10812273 10821314 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo15g0299 - - adu:107489118 1041.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g1655 05 31745096 31753912 Amo15g0299 15 10812273 10821314 hybridization
Amo15g0303 15 10990382 10998448 Amo15g0299 15 10812273 10821314 PCT
Amo15g0299 15 10812273 10821314 Amo15g0303 15 10990382 10998448 PCT