Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo14g1349 ATGTCTTCTTCTTCTTCTTCTCGATTCAATGGCAAGATGGGTGGCATGAAGTTTTGCACCAAATGCAATAACATTCTGTACCCTAAGGAAGACAAGGAGTTAAAGATTCTCATGTACGCGTGCCGCAATTGCGATCACGAGGAGATTGCTGATAGCAACATTGTGTACAGAACAAAGATACATCATTCTACAGCAGAGAATACTCAGGCTACTGAGAATCTAGCTGCAGACCCAACTCTTCCACGCACCAAGGCGGCTCGCTGCAGTCAATGCAACCATGGAGAAGCTGTGTTCTTTCAGCCAGAGGTGAAGAAGAAATGTGTCTTTTTTTCGTTTGCTGCAACCCGAATTGCGGTCACCGATGGAGAGACTGAGGCTGCTCAATTCAAGTTCCATATTGGATTGAAGATAAAATTTGAGAGCAACAACATTCTGTACCCTAAGGAAGACAGGGAGCAGAAGATTCTTCTTTATGCATGCCGTAATTGCGATCACCAGGAGGTTGCTGATAACAACTGTGTGTACAGAAATGAGGTGCACCATTCTGTGGGAGAGCGAACTCAGGTGTTGCAGGATGTGGCTGCAGATCCAACTCTACCTCGCACCAAGGCAGTTAGATGTGTTCAGTGCAACCATGGAGAAGCCGTTTTCTTCCAGGCAACAGCCCGAGGGGAAGAAGGAATGACGCTTTTCTTTGTTTGCTGTAATCCAAACTGTGGATACCGATGGAGAGACTGA 738 0.4621 MSSSSSSRFNGKMGGMKFCTKCNNILYPKEDKELKILMYACRNCDHEEIADSNIVYRTKIHHSTAENTQATENLAADPTLPRTKAARCSQCNHGEAVFFQPEVKKKCVFFSFAATRIAVTDGETEAAQFKFHIGLKIKFESNNILYPKEDREQKILLYACRNCDHQEVADNNCVYRNEVHHSVGERTQVLQDVAADPTLPRTKAVRCVQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGYRWRD* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo14g1349 245 SUPERFAMILY Zinc beta-ribbon 65 103 - -
Amo14g1349 245 Gene3D - 13 58 - -
Amo14g1349 245 Gene3D - 123 177 - -
Amo14g1349 245 ProSiteProfiles Zinc finger TFIIS-type profile. 203 244 IPR001222 GO:0003676|GO:0006351|GO:0008270
Amo14g1349 245 PANTHER DNA-DIRECTED RNA POLYMERASE 135 245 IPR012164 GO:0006351
Amo14g1349 245 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 13 104 - -
Amo14g1349 245 ProSitePatterns RNA polymerases M / 15 Kd subunits signature. 18 44 IPR019761 -
Amo14g1349 245 SMART Cys4_2 205 245 IPR001222 GO:0003676|GO:0006351|GO:0008270
Amo14g1349 245 PANTHER DNA-DIRECTED RNA POLYMERASE 13 104 IPR012164 GO:0006351
Amo14g1349 245 Pfam RNA polymerases M/15 Kd subunit 16 52 IPR001529 GO:0006351
Amo14g1349 245 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 135 245 - -
Amo14g1349 245 SUPERFAMILY Zinc beta-ribbon 15 60 - -
Amo14g1349 245 SUPERFAMILY Zinc beta-ribbon 182 245 - -
Amo14g1349 245 Gene3D - 178 245 - -
Amo14g1349 245 Gene3D - 59 111 - -
Amo14g1349 245 SMART rpol9cneu 17 70 IPR001529 GO:0006351
Amo14g1349 245 SMART rpol9cneu 142 189 IPR001529 GO:0006351
Amo14g1349 245 Pfam Transcription factor S-II (TFIIS) 206 244 IPR001222 GO:0003676|GO:0006351|GO:0008270
Amo14g1349 245 CDD Zn-ribbon_RPB9 195 244 IPR034012 GO:0006379
Amo14g1349 245 SUPERFAMILY Zinc beta-ribbon 139 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo14g1349 Amo-Chr14 22247399 22252001 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo14g1349 K03017 - itr:116012785 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1349 14 22247399 22252001 Amo14g1349 14 22247399 22252001 ECH
Amo14g1349 14 22247399 22252001 Amo04g0019 04 243698 248289 hybridization
Amo01g3307 01 105417838 105420246 Amo14g1349 14 22247399 22252001 PCT
Amo14g1349 14 22247399 22252001 Amo01g3307 01 105417838 105420246 PCT