Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo01g3307 ATGACTGTGTACAAGTTCTGCCCTGAATGCAACAATATTCTTTATCCTAAGGAAGACAGGGAGCATAAAATTCTCTTCTTCGCTTGCCGCACCTGTGATCATCAGGAGGTTGCTGACAATAACTGTGTGTATAGAAATGAGATATATCATTCGGCTGAGGAGCGAACTCAAGTGTTGGAAGATGTAGCTTCAGATCCAACTCTTCCTCGTACCAAGTCTGTTCGTTGCGCTCAATGCAATCATGGAGAAGCTCTCTTCTTCCAGGCAACTATTAGAAGGGAAGAAGGTATGACACTTTCTTATGTTTGCTGCAACCCAAACTGTGGCTACCGATGGCGAGATCAAGATTCATAA 354 0.435 MTVYKFCPECNNILYPKEDREHKILFFACRTCDHQEVADNNCVYRNEIYHSAEERTQVLEDVASDPTLPRTKSVRCAQCNHGEALFFQATIRREEGMTLSYVCCNPNCGYRWRDQDS* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo01g3307 117 Pfam RNA polymerases M/15 Kd subunit 5 36 IPR001529 GO:0006351
Amo01g3307 117 CDD Zn-ribbon_RPB9 64 113 IPR034012 GO:0006379
Amo01g3307 117 Gene3D - 47 114 - -
Amo01g3307 117 SUPERFAMILY Zinc beta-ribbon 51 115 - -
Amo01g3307 117 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 1 114 - -
Amo01g3307 117 SMART rpol9cneu 5 58 IPR001529 GO:0006351
Amo01g3307 117 SUPERFAMILY Zinc beta-ribbon 4 48 - -
Amo01g3307 117 ProSitePatterns RNA polymerases M / 15 Kd subunits signature. 6 32 IPR019761 -
Amo01g3307 117 PIRSF RNApol_RpoM 4 116 IPR012164 GO:0006351
Amo01g3307 117 ProSiteProfiles Zinc finger TFIIS-type profile. 72 113 IPR001222 GO:0003676|GO:0006351|GO:0008270
Amo01g3307 117 Pfam Transcription factor S-II (TFIIS) 75 113 IPR001222 GO:0003676|GO:0006351|GO:0008270
Amo01g3307 117 SMART Cys4_2 74 114 IPR001222 GO:0003676|GO:0006351|GO:0008270
Amo01g3307 117 Gene3D - 1 46 - -
Amo01g3307 117 PANTHER DNA-DIRECTED RNA POLYMERASE 1 114 IPR012164 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo01g3307 Amo-Chr1 105417838 105420246 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo01g3307 K03017 - vvi:100253286 214.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo01g3307 01 105417838 105420246 Amo14g1349 14 22247399 22252001 PCT
Amo01g3307 01 105417838 105420246 Amo04g0019 04 243698 248289 PCT
Amo14g1349 14 22247399 22252001 Amo01g3307 01 105417838 105420246 PCT
Amo04g0019 04 243698 248289 Amo01g3307 01 105417838 105420246 PCT