Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g0019 ATGTCTTCTTCTTCTTCTCGATTCAATGGCAAGATGGGTGGCTTGAAGTTTTGCACCAAATGCAATAACATTCTGTACCCTAAGGAAGACAAGGAGTTAAAGATTCTCATGGACGCTTGCCGCAATTGCGATCACGAGGAGATTGCTCATAGCAACATTGTGTATAGAACAAAGATACATCATTCTACTGCAGAGAATACTCAGGCTACTGAGAATCTAGCTGCAGACCCAACTCTTCCACGCACCAAGGCGGCTCGCTGCAGTCAATGCAACCATGGAGAAGCTGTGTTCTTTCAGCCAGAGGTGAAGAAGAAATGTGTCTTTTTTTCGTTTGCTGCAACCCGAATTGCGGTCACCGATGGAGAGACTGAGGCTGCTCAATTCAAGTTCCATATTGGATTGAAGATAAAATTTGAGAGCAACAACATTCTGTACCCTAAGGAAGACAGGGAGCAGAAGATTCTTCTTTATGCATGCCGTAATTGCGATCACCAGGAGGTTGCTGATAACAACTGTGTGTACAGAAATGAGGTGCACCATTCTGTGGGAGAGCGAACTCAGGTGTTGCAGGATGTGGCTGCAGATCCAACTCTACCTCGCACCAAGGCAGTTAGATGTGTTCAGTGCAACCATGGAGAAGCCGTTTTCTTCCAGGCAACAGCCCGAGGGGAAGAAGGAATGACGCTTTTCTTTGTTTGCTGTAATCCAAACTGTGGATACCGATGGAGAGACTGA 735 0.4612 MSSSSSRFNGKMGGLKFCTKCNNILYPKEDKELKILMDACRNCDHEEIAHSNIVYRTKIHHSTAENTQATENLAADPTLPRTKAARCSQCNHGEAVFFQPEVKKKCVFFSFAATRIAVTDGETEAAQFKFHIGLKIKFESNNILYPKEDREQKILLYACRNCDHQEVADNNCVYRNEVHHSVGERTQVLQDVAADPTLPRTKAVRCVQCNHGEAVFFQATARGEEGMTLFFVCCNPNCGYRWRD* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g0019 244 SUPERFAMILY Zinc beta-ribbon 64 102 - -
Amo04g0019 244 Gene3D - 12 57 - -
Amo04g0019 244 ProSitePatterns RNA polymerases M / 15 Kd subunits signature. 17 43 IPR019761 -
Amo04g0019 244 Gene3D - 122 176 - -
Amo04g0019 244 CDD Zn-ribbon_RPB9 194 243 IPR034012 GO:0006379
Amo04g0019 244 ProSiteProfiles Zinc finger TFIIS-type profile. 202 243 IPR001222 GO:0003676|GO:0006351|GO:0008270
Amo04g0019 244 SUPERFAMILY Zinc beta-ribbon 181 244 - -
Amo04g0019 244 Pfam RNA polymerases M/15 Kd subunit 15 47 IPR001529 GO:0006351
Amo04g0019 244 Pfam Transcription factor S-II (TFIIS) 205 243 IPR001222 GO:0003676|GO:0006351|GO:0008270
Amo04g0019 244 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 12 103 - -
Amo04g0019 244 SUPERFAMILY Zinc beta-ribbon 14 59 - -
Amo04g0019 244 SMART rpol9cneu 141 188 IPR001529 GO:0006351
Amo04g0019 244 SMART rpol9cneu 16 69 IPR001529 GO:0006351
Amo04g0019 244 Gene3D - 177 244 - -
Amo04g0019 244 Gene3D - 58 110 - -
Amo04g0019 244 SUPERFAMILY Zinc beta-ribbon 138 178 - -
Amo04g0019 244 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT 134 244 - -
Amo04g0019 244 PANTHER DNA-DIRECTED RNA POLYMERASE 12 103 IPR012164 GO:0006351
Amo04g0019 244 PANTHER DNA-DIRECTED RNA POLYMERASE 134 244 IPR012164 GO:0006351
Amo04g0019 244 SMART Cys4_2 204 244 IPR001222 GO:0003676|GO:0006351|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g0019 Amo-Chr4 243698 248289 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g0019 K03017 - itr:116012785 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g1349 14 22247399 22252001 Amo04g0019 04 243698 248289 hybridization
Amo01g3307 01 105417838 105420246 Amo04g0019 04 243698 248289 PCT
Amo04g0019 04 243698 248289 Amo01g3307 01 105417838 105420246 PCT