Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2468 ATGGGAGAAACCCAACTTGAAGAGTCTGAAGCAACTAATAGACAGATCAGCAGTAACACAAAGTCCAATTCTAAACTGATTGTAGAGAAAACATTTGAGCGTCCTGAGTGGCTACCTGATGGCTGGAATTGTTACATTAATCCGCATGGAAAGAAATTCTACTCCAAATTAGAAGTGTTACGGTATCTTGAAACTATAAAGGGCAACAACTGCAATTCCAGAAAGGAGGAATCCAATACCATCCATTCTCCAAACAATGATGCACTTGAGAAGCCCATGGTTGAGACATCCAGGACTGAGAATTCCGTGGCTGAGAAGTCCACGGCTGGGAAGCCCACGGCTGGGAAGCCCAAGGCTGGGAAGCCCAGGGGTGAGAAGTCCACAACTGGGAAGCCCAGGTCTGAGAAGTCCACAGCTGAGAAGCCTGGGGCTGAGAAGTCCACAGTTGAGAAGCCCAGGGCGGAGAAGTCCACAGCTGAGGATTTACCACCTGGCTGGATAATAGAAGTCAAAGAAAGGAAGAACAGCAAAACCAATAGAAAAGATTTGTTATATATAGATCCAGAGAGTGGATATGTATTCCGTTCCAAGAAGGATGCACTGCGGTATCTCGAGTCTGGAGATATAAGTTCGTGTGCGATTAAACCATTTAAACGGGAAATTCAAGATGAAGATAAATTATCTCCGGCCTCTACAGTCAAAAAGCAGAAAATAAAGCAGTCTGGAATTAACCGACAACTTTTTGCTGGCAAAGAAATATCCGATGAAAGCAGCTTAGAATTGCCAGATGCTAACAGCTCAGAAAAAAGGCAACATGTGGAGGTGTCTTCTGGAATGATGGCTCCTTTTGTACCTACAGGGGAATCTATTGGCCAAATTCAATCGTTAAAGAATGGAGTTGCATACCCTCCCAAAACAAAGAAAATGTCTGATCCAGATGATGTGCAAAATAAGAATGATGTTGTCAATGTGGTTGAAAATGCTAGTAAGAAGAATCACAGTAACCCTACTGTATCAAAAAACAGGGGGTTCAGTGTGGCTCACCGGTCTTCGCCGAGACTTGCTGCAGCAGAACCTGACCAATTGACTAACAGCCTGACCAGTGAACAGTGCCTTGAAGTTCCAAGAAGAAACTTGAGAAGAGGTAGTCAGGGTTTGGCCGCTGACGATCACTCTTTGAAAGAATCCAAATTGCTTGCAAGTGAGATTGCTAAAAGTGGAGAAATTTGTCCTGACTTGAACAAATCCAGCAACAAGAAAGAGCCTTCGGTTCCTCGGCGAGCATCAAAAAGACTTGCTGGATCTGAGCCTGAGCTGATGAGCAACTCCCTCTCCTATGAAAGAGCTCCGGAATATAATAAAAGCAAAAAGTCTAAAAGTGGGATCAATACAAACTTGCTTTCATGTGATGGTGAGGCAGGGTTGAAGCTTGTAGAACATGGATCAATGAATGGATTGTCATCCACCAGAGGGAGGAAACACCCCCAAACCTTGCCTGTAACCAAAGATAAACTGGATAAACGTAAAAATGAGGAAATGAATGATGAGAAATCAGAACTTCAGCAATCTCTTGCATTCCATTATTCTTGGTCTGACCCAAGTTTGGAGTTTGCAATTAAGACCCTCACTGGCACATTACCTGCAGAGGATTCAGTTGCCAACAGACCTATAGTGATTTCTGAAACAGATAAGTTGCCTGAAAATGATGTGTTTAAGAATGTTACAGGAAGCAACAGTGACAAAAAACCCAAGGTAAATTCAAGTAAATCCAAGAAGAAGAAAGAGCCTAAAGTGCCTACGCGATTGTCTAAGCGACTTTCTGGCCATGATCCTGAGGTACTTCCTACTGAAACAGCACCTGAATATTCCACTAGAAAATCAGGTAAGATTAAACCAGATGCAAATGAGATTTTAACTAATGGAGCATCCGGGAAGCTTCATGCTGGGGAAGAATCATCCAACCTTATTGTTCATGCATCTGACATGTTGAAAACTAGCAAATGTGGTGAATCATCGAATGGTGATGAGTTGCAAAAATCACAAACTGTTCCCAATGAACAACAACGGGGGCCTGAAGCTGAAAGTATTAATGAGAGATCAGAGCCACAGTTCCCTGTACAGTTTGGGGACAACTGGTCGGATCCATGTGTAGAATTTGCAGTTAAGACTCTCACTGGTTCGGTGACTGTTGATGCTGCCAATGTGCCTGTTGTGACACTTGATGTCAATGACCCACCAAATGAGGAATTGTCGGAGAATGCAGTGCAGAAGAGCAGTGATGCTGCTGCCGATAACAACAATCATTGCCAGATCAAGGAAGTGCTTAATGCACCAGTTTGCCGGCCATCGGAACAATGCTTAGAGCAAGGGCAACCTGAGTTGAGATCCAACCCTACATCCTATCAAAGTGATCCTGCATTTGCAAGTAGTGTGTCTTGCGGTGATGAAGGCAAAATAACAAGGAACTCTGATGGGGGACAATCTCTACATGTTGAAGCTGGGAATATGACGCAAATTGATATAAACACACTCTTTTTTGACGACCCATTCACAGAAGATGAACAGATTCTTGAGGATAATTCTATTGCAGAACAAGCACAGCCTGGAACAGAAGCTACAAACCGTGATAACTCTGAAAGAGAGTTTTGTGTTTCCTTCATGGACACTTGGTCAGACCCATGCTTAGAATTTGCATTTAAGACTCTCACGGGAGATATCCAAGTTGAGGAAAATATGGCGGGGCAAGGATGTTTCCCGGAACATGCGAACCGACATGACCAGAGAAATGGTGGCTCGGCATTACCGGAAATCGGATCTTCCAGCATCTCCCGAAGTCACATGGCAGAGAAATCCGTGCCGCCACAACCACCATCAATGAGCCCTTCATTCCTCTCACGAAGTCACATGGCAGAGAAATCCGTGCCGCCACAACCACCATCAATGAGCCCTTCCTTCCTCTCCGGAAGTCACATGGCAGAGAAATCCATGCTGCCACAACCACCATCAATGAGCCCTTCCTTCCTCTCCGGAAGTCACATGGCAGAGAAATCTGTGCCGACACAACCACCATCATTGAGCCCTTCCTTCCTCTCCCGAAGTCACATTGCAGAGAAATCTGTGCCGACACAACCACCATCAATGAGCCCTTCCTTCCTCTCCCTAAGTCACATGGCAGAGAAATCTGTGCCGGCACAACTACCATCAATGAGCCAGCCCTTCCTCTCCCTAAGTCACATAGCAGATAAACCCATGCCGGCACAACCACCATCGATGAGCCCTTCTTTCTTCCCCCCGACACAACAGTCATCACAACAGTCATCGATGAACTCTTCAATCTTCCCCGAAGAAAAATCAAGCCAGCAGCACACAGGAACCGATGCGCAGAGGCATTATTCTCAGTACAACATTAATTTTCAAAGAAGGTAA 3426 0.4492 MGETQLEESEATNRQISSNTKSNSKLIVEKTFERPEWLPDGWNCYINPHGKKFYSKLEVLRYLETIKGNNCNSRKEESNTIHSPNNDALEKPMVETSRTENSVAEKSTAGKPTAGKPKAGKPRGEKSTTGKPRSEKSTAEKPGAEKSTVEKPRAEKSTAEDLPPGWIIEVKERKNSKTNRKDLLYIDPESGYVFRSKKDALRYLESGDISSCAIKPFKREIQDEDKLSPASTVKKQKIKQSGINRQLFAGKEISDESSLELPDANSSEKRQHVEVSSGMMAPFVPTGESIGQIQSLKNGVAYPPKTKKMSDPDDVQNKNDVVNVVENASKKNHSNPTVSKNRGFSVAHRSSPRLAAAEPDQLTNSLTSEQCLEVPRRNLRRGSQGLAADDHSLKESKLLASEIAKSGEICPDLNKSSNKKEPSVPRRASKRLAGSEPELMSNSLSYERAPEYNKSKKSKSGINTNLLSCDGEAGLKLVEHGSMNGLSSTRGRKHPQTLPVTKDKLDKRKNEEMNDEKSELQQSLAFHYSWSDPSLEFAIKTLTGTLPAEDSVANRPIVISETDKLPENDVFKNVTGSNSDKKPKVNSSKSKKKKEPKVPTRLSKRLSGHDPEVLPTETAPEYSTRKSGKIKPDANEILTNGASGKLHAGEESSNLIVHASDMLKTSKCGESSNGDELQKSQTVPNEQQRGPEAESINERSEPQFPVQFGDNWSDPCVEFAVKTLTGSVTVDAANVPVVTLDVNDPPNEELSENAVQKSSDAAADNNNHCQIKEVLNAPVCRPSEQCLEQGQPELRSNPTSYQSDPAFASSVSCGDEGKITRNSDGGQSLHVEAGNMTQIDINTLFFDDPFTEDEQILEDNSIAEQAQPGTEATNRDNSEREFCVSFMDTWSDPCLEFAFKTLTGDIQVEENMAGQGCFPEHANRHDQRNGGSALPEIGSSSISRSHMAEKSVPPQPPSMSPSFLSRSHMAEKSVPPQPPSMSPSFLSGSHMAEKSMLPQPPSMSPSFLSGSHMAEKSVPTQPPSLSPSFLSRSHIAEKSVPTQPPSMSPSFLSLSHMAEKSVPAQLPSMSQPFLSLSHIADKPMPAQPPSMSPSFFPPTQQSSQQSSMNSSIFPEEKSSQQHTGTDAQRHYSQYNINFQRR* 1142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2468 1141 MobiDBLite consensus disorder prediction 496 518 - -
Amo05g2468 1141 MobiDBLite consensus disorder prediction 1096 1141 - -
Amo05g2468 1141 MobiDBLite consensus disorder prediction 249 274 - -
Amo05g2468 1141 Gene3D - 126 247 - -
Amo05g2468 1141 Gene3D - 1 125 - -
Amo05g2468 1141 MobiDBLite consensus disorder prediction 1080 1141 - -
Amo05g2468 1141 MobiDBLite consensus disorder prediction 256 270 - -
Amo05g2468 1141 MobiDBLite consensus disorder prediction 917 1029 - -
Amo05g2468 1141 MobiDBLite consensus disorder prediction 419 433 - -
Amo05g2468 1141 Pfam Methyl-CpG binding domain 160 210 IPR001739 GO:0003677
Amo05g2468 1141 MobiDBLite consensus disorder prediction 70 164 - -
Amo05g2468 1141 MobiDBLite consensus disorder prediction 118 158 - -
Amo05g2468 1141 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 152 224 IPR001739 GO:0003677
Amo05g2468 1141 MobiDBLite consensus disorder prediction 933 948 - -
Amo05g2468 1141 MobiDBLite consensus disorder prediction 1 24 - -
Amo05g2468 1141 MobiDBLite consensus disorder prediction 326 346 - -
Amo05g2468 1141 MobiDBLite consensus disorder prediction 326 361 - -
Amo05g2468 1141 PANTHER OS04G0193200 PROTEIN 5 577 - -
Amo05g2468 1141 PANTHER OS04G0193200 PROTEIN 561 968 - -
Amo05g2468 1141 MobiDBLite consensus disorder prediction 665 691 - -
Amo05g2468 1141 SUPERFAMILY DNA-binding domain 158 217 IPR016177 GO:0003677
Amo05g2468 1141 MobiDBLite consensus disorder prediction 70 108 - -
Amo05g2468 1141 SUPERFAMILY DNA-binding domain 32 72 IPR016177 GO:0003677
Amo05g2468 1141 PANTHER OS04G0193200 PROTEIN 5 577 IPR038945 -
Amo05g2468 1141 PANTHER OS04G0193200 PROTEIN 561 968 IPR038945 -
Amo05g2468 1141 MobiDBLite consensus disorder prediction 484 518 - -
Amo05g2468 1141 MobiDBLite consensus disorder prediction 409 463 - -
Amo05g2468 1141 MobiDBLite consensus disorder prediction 665 705 - -
Amo05g2468 1141 MobiDBLite consensus disorder prediction 999 1029 - -
Amo05g2468 1141 MobiDBLite consensus disorder prediction 569 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2468 Amo-Chr5 52253633 52259261 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2468 - - aip:107643060 1971.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g2468 05 52253633 52259261 Amo13g3540 13 119944442 119950612 PCT
Amo05g2468 05 52253633 52259261 Amo03g2522 03 110108873 110115061 PCT