Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g2522 ATGGCCGAACCTGATTCCGAAACGCCTGAACAAACAAATACCCAGATAAGCACCAACGCAGAATGCACACCTGAACAACAACTTCAGATTGTAGACAAAGCTATTGATCGCCCTGAGTGGTTACCTGATGGGTGGACTGTGGATATCAGAACTCGCAAAACTGGTTCGCTTACGGGATCTGGATATAAGTGTTACATTGAACCATTAAATGGATACACATTCTACTCCAAACCTGCGGTATTACGATATCTGGAACCTAAGGACAGTACATGCATTCCGAAGAAGAAGAAAGCGAAATCCCCTGCCACAGGGTCCCCAAGCATCGTTAGTATCCCTATATCCTTAGTTTGGTTCCGGGTTGCGATTGAGAAATCCATTGCAGAGGATCTACCACCTGGGTGGATAAAAGAAGTAACAATTAGAAAAAACCACAACGGCATCAGGAAAGATCCGGTATATAAAGATCCAGTAAGTGGCCATGCTTTCCGTTCCAAGAGGGATGTACAGCGTTATCTTGCATCTGGGTATATTAGGCCTTCTAGAAAAAGAATCCAGGATGGAGACAAGTTAACTCCATCACCTGCTGGTAAAAGACACAAACTGAATGAGTCTGCACCTGAACAACAGCTTTCTGCTGGTGGAGCAACATTTGATAAAAGCAGCTTAGAACTGATAGATGACAACAGCTCAAGAAAAGGACAAGATGTGAACATCCAATCTGGAATGATGATGGTTGCTCCTATTTCTGTTGTAAAGATGCATTCACTAGAGGATAGGGCTGAAGACCTTTCTGAAATTGAGAAAATATCTGATCCAGATGATATGCAAGAGGAGCATGTTGGGAATAGGATGGAGAATGGTAATAAAAAGAATCACAGTAACCCTAGCAGATCCAAAGAGGGGGAGTTCAATGTGCATCGCCAATCTTCACCACAACTCCATAATATGAGAGAGCTGCACAGTCCTTCCCAGGTTTTGAAGCAACTTGGTGGATTTGATGATGACATGAAGATGAATAATTCCATGTCCTGTGAAAAGACCCCCAAACATGGTCGCAAAAGGTCAAAAGTTGAGATCAGTGCAGACTTGCAACAAAGTGAGGGTGTGTCAGCTGCAGAGCTTGCAGATTCTGCACCGCTAAAAAGAGAGTCAGCAAATAAAAAACGGAAATCTTATAAAACCCCACCTATTACAGGTGATCAACTGGAGAAACCGAGAGGTAAAGAAATGTATGATGAGAAATCAGAACCCCAAGTGTCATCGGCATTCAACTACTCTTCGTCTGACCCAAGCTTAGGAAATGCAACTAATAATCTGCAGAGTATGTTACTAGTTGAGAATGGACCTAATACTACTGGAATTGCTACAGTTCTTCAAACTGATATTCAAAAGAAATCGGTTGACAGTGTTACTGGAAGAAGCGAGGATGGATACCCACAGGTACGTTCAAATAAATCCAAAAAGAAGAAAGAGCTTAAAGTGCCTATGCGAGTATCAAAGCGACTTGCTGGCCTTGAACCTGAGGTACAGCCTTCCGGAAGAGCTCTTGAATATGCCACTAGAAAATCAAGAAAAGAACCACCACCTGCAACTGCTACTCAAATTTCAATTGATGGGGCATCTGACCATCTTAACCTTGAGGAAGAAACCAAGCTTACATGTCATGCATCTCATAGTTTGAAAACAGAAGTACTAAGAGAATCATCAAACCAAAGTGAGAAGTCATGCGATGCCCCAACTGTTCCCAAGGAACAATTGCAGAAAGTTATTGAAGCTGAAAATACCAGTGATGAGAGATCAGAGCCACAGCTTCCAGTGCCATTCGGGGGGGACTCTTGGTCAGATCCATGCCTAGAATTTGCATTCAAGACTCTTACTGATGATGTGCTATTTCATCCTGCAACTGACATTTTGCCTGTTATAACTCCCGATCTTAATTACCTACCAAATACGGAATTGCATGGAGTGATGATAACCAGTGAAGAAGCTCATGATAACTCGAACCAACCCCAGAGCAAGAAAGAGCTTAATATGGTTAACCCCTCAGAACCATTCCCAAGGCAACTAGAGATTGCTCCTAAATTTACAACTAGTGAACATTATGGTGATGAAGGCTACACAAGGAATTTAGCTGGAGAATCTTTACATAGTCAAGTTGGAAACGTAATGCCACTCATGCATCATACAGTGATACACCAAGATCCATTGAAGGAAGGTGTACAGGTTCATAAGGGTGAATCCATTATAATGGGGCCACCTCTGGTTGAAACTGGAACTGTAAACCATGATAACTCTAAGTCACAGTTCTGTGCCTCCTTTGCAAATTCTTGGTCTGATCCATGCCTTGAATTTGCATTTAAGACTCTTACAGGTGCGACATCAGCGGACAATAATTTACAGCAACCTCCAAATTTCCATAACCAGATCGATGGTGGCTCATTGTTTCCTGACTTTGGATCTTCCAGCTTTTCTCAGAGCAATTTCTCATTTTACCATGACATAGGAGTGAATTCCATGCCGGGGCAACAATCATCACGTAGCAATCCAATTCCACCCTTAGACAAGGCGAGCCAGCGAGGTTATCCTGAAGTTGATCCGCAAAATCAATATTCTCAGTTCCACAATCATTTTCCAAGGTAA 2640 0.4246 MAEPDSETPEQTNTQISTNAECTPEQQLQIVDKAIDRPEWLPDGWTVDIRTRKTGSLTGSGYKCYIEPLNGYTFYSKPAVLRYLEPKDSTCIPKKKKAKSPATGSPSIVSIPISLVWFRVAIEKSIAEDLPPGWIKEVTIRKNHNGIRKDPVYKDPVSGHAFRSKRDVQRYLASGYIRPSRKRIQDGDKLTPSPAGKRHKLNESAPEQQLSAGGATFDKSSLELIDDNSSRKGQDVNIQSGMMMVAPISVVKMHSLEDRAEDLSEIEKISDPDDMQEEHVGNRMENGNKKNHSNPSRSKEGEFNVHRQSSPQLHNMRELHSPSQVLKQLGGFDDDMKMNNSMSCEKTPKHGRKRSKVEISADLQQSEGVSAAELADSAPLKRESANKKRKSYKTPPITGDQLEKPRGKEMYDEKSEPQVSSAFNYSSSDPSLGNATNNLQSMLLVENGPNTTGIATVLQTDIQKKSVDSVTGRSEDGYPQVRSNKSKKKKELKVPMRVSKRLAGLEPEVQPSGRALEYATRKSRKEPPPATATQISIDGASDHLNLEEETKLTCHASHSLKTEVLRESSNQSEKSCDAPTVPKEQLQKVIEAENTSDERSEPQLPVPFGGDSWSDPCLEFAFKTLTDDVLFHPATDILPVITPDLNYLPNTELHGVMITSEEAHDNSNQPQSKKELNMVNPSEPFPRQLEIAPKFTTSEHYGDEGYTRNLAGESLHSQVGNVMPLMHHTVIHQDPLKEGVQVHKGESIIMGPPLVETGTVNHDNSKSQFCASFANSWSDPCLEFAFKTLTGATSADNNLQQPPNFHNQIDGGSLFPDFGSSSFSQSNFSFYHDIGVNSMPGQQSSRSNPIPPLDKASQRGYPEVDPQNQYSQFHNHFPR* 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g2522 879 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 31 106 IPR001739 GO:0003677
Amo03g2522 879 MobiDBLite consensus disorder prediction 346 360 - -
Amo03g2522 879 MobiDBLite consensus disorder prediction 862 879 - -
Amo03g2522 879 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 120 194 IPR001739 GO:0003677
Amo03g2522 879 MobiDBLite consensus disorder prediction 265 431 - -
Amo03g2522 879 MobiDBLite consensus disorder prediction 839 879 - -
Amo03g2522 879 MobiDBLite consensus disorder prediction 465 540 - -
Amo03g2522 879 PANTHER OS04G0193200 PROTEIN 3 447 IPR038945 -
Amo03g2522 879 PANTHER OS04G0193200 PROTEIN 463 872 IPR038945 -
Amo03g2522 879 MobiDBLite consensus disorder prediction 1 23 - -
Amo03g2522 879 MobiDBLite consensus disorder prediction 182 215 - -
Amo03g2522 879 MobiDBLite consensus disorder prediction 305 322 - -
Amo03g2522 879 MobiDBLite consensus disorder prediction 417 431 - -
Amo03g2522 879 SUPERFAMILY DNA-binding domain 34 90 IPR016177 GO:0003677
Amo03g2522 879 MobiDBLite consensus disorder prediction 265 304 - -
Amo03g2522 879 Gene3D - 119 215 - -
Amo03g2522 879 Gene3D - 7 112 - -
Amo03g2522 879 PANTHER OS04G0193200 PROTEIN 3 447 - -
Amo03g2522 879 PANTHER OS04G0193200 PROTEIN 463 872 - -
Amo03g2522 879 MobiDBLite consensus disorder prediction 380 394 - -
Amo03g2522 879 MobiDBLite consensus disorder prediction 182 204 - -
Amo03g2522 879 MobiDBLite consensus disorder prediction 591 610 - -
Amo03g2522 879 SUPERFAMILY DNA-binding domain 108 175 IPR016177 GO:0003677
Amo03g2522 879 CDD MBD 130 172 - -
Amo03g2522 879 Pfam Methyl-CpG binding domain 128 175 IPR001739 GO:0003677
Amo03g2522 879 Pfam Methyl-CpG binding domain 39 88 IPR001739 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g2522 Amo-Chr3 110108873 110115061 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g2522 - - adu:107479990 1721.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g3540 13 119944442 119950612 Amo03g2522 03 110108873 110115061 hybridization
Amo05g2468 05 52253633 52259261 Amo03g2522 03 110108873 110115061 PCT