Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2841 ATGGCTTTGACTCGCTCTCACTCTCTCAAGGAGAGGCTCGATGAGACTCTTGCTGGACAGAGGAATGAGATTTTGGCCCTTCTTGCTAGGATCGAGGCTAAGGGCAAGGGAATCCTGCAGCATCACCAGGTCATTGCTGAGTTTGAAGAAATCCCTGAAGAGAAGAGGCAGAAGCTATATGATGGTGCCTTTGGAGAAGTTCTGAGATCTACTCAGGAAGCCATAGTGCTGCCACCATTTGTTGCTTTGGCAGTTCGTCCAAGGCCTGGTGTTTGGGAGTACCTGCGCGTGAATGTGCACGCGCTTGTTGTTGATGAGTTGCGTCCTGCTGAGTACCTCAAGTTCAAGGAAGAGCTTGTTGATGGCAGTTCCAACGGCAACTTTGTGCTTGAGTTGGACTTTGAGCCTTTTAACGCATCCTTCCCCCGCCCAACACTTAACAAGTCAATTGGGAATGGCGTTGAGTTCCTTAACCGCCACCTTTCCGCTAAGCTTTTCCATGGCAAGGAGAGCATGCAGCCATTGCTGGAGTTCCTAAGGCTTCATAGTTACAATGGAAAGACTATGATGTTGAATGACAGGATTCAAAACCTGAATTCTCTTCAACATGTTCTGAGAAAGGCAGAGGACTATCTGGTTACACTTGCTCCCGAAACACCCTACTCAGTATTCGAGCACAAATTCCAGGAGATAGGTTTGGAGAGAGGGTGGGGTGACACCGCCGAGCGTGTCCTCGAGATGATCCAGCTTCTCCTGGATCTCCTCGAGGCACCTGACCCTTGTACCCTGGAGACATTCCTTGGAAGGATCCCTATGGTCTTCAATGTGGTGATCCTTTCTCCCCATGGTTACTTTGCTCAAGACAATGTCTTGGGATACCCTGATACTGGTGGCCAGGTTGTTTACATCTTGGATCAAGTTCGTGCATTGGAGAATGAGATGCTCAACCGCATCAAGAAACAAGGCTTGGACATCACCCCTCGCATTCTCATTCTCACCCGGCTTCTCCCTGATGCCGTTGGAACTACTTGCGGCCAACGTCTTGAGAAGGTATTCGGCACTGAGCATTGCCACATTCTTCGAGTTCCCTTTAGAACAGAGAAAGGAATTGTTCGCAAATGGATCTCAAGATTCGAAGTCTGGCCCTACCTAGAAACTTACACTGAGGATGCTGCTCATGAACTTGCCAAAGAGTTGAAAGGCAAGCCAGATCTGATTGTTGGAAACTACAGTGATGGAAACATTGTTGCCTCTCTGTTAGCACACAAATTGGGTGTAACTCAGTGTACCATTGCTCATGCACTTGAGAAGACCAAATATCCAGAATCTGACATTTACTGGAAGAAATTTGATGACAAATATCACTTCTCATGCCAATTCACAGCTGATCTTTTTGCAATGAACCACACAGATTTCATCATCACCAGTACCTTCCAAGAAATTGCTGGAAGCAAGGACACTGTTGGACAATATGAGAGCCACACTCACTTCACCCTTCCTGGACTCTACCGTGTTGTCCACGGCATTGATGTCTTCGATCCAAAGTTTAACATTGTCTCTCCTGGTGCCGACATGAGCATTTACTTCCCATACACTGAAACCGAGCGCAGGTTGACATCCTTCCACCCGGAGATTGAAGAGCTACTGTATAGCAATGTAGAGAACGAGGAGCACATATGTGTACTGAAGGATCGTACCAAGCCAATTATCTTCACCATGGCGAGGTTGGACCGTGTGAAGAACATCACAGGACTTGTTGAGTGGTACGGCAAGAACGCCCGCCTTAGGGAGCTTGTGAACCTTGTCGTGGTCGCTGGAGACAGGCGGAAGGAGTCCAAGGACTTGGAAGAGAAAGCTGAGATGAAGAAGATGTATGGCCTCATTGAGACTTACAAGCTAAACGGCCAATTCAGGTGGATCTCCTCACAAATGAACAGAGTGAGGAATGGAGAGCTTTACCGTGTGATCTGCGACACCAAAGGTGCGTTCGTGCAGCCTGCGATCTACGAAGCGTTCGGTCTGACAGTTGTTGAGGCCATGACTTGTGGATTGCCAACATTTGCAACTTGCAATGGTGGTCCTGCTGAGATCATTGTCAATGGAAAATCTGGCTACCATATTGATCCTTACCATGGTGATCGTGCTGCTGAGATTCTTGTTGATTTCTTCGAGAAGAGCAAGGCTGATCCATCTCACTGGGACAAGATCTCTCAGGGTGGTCTCAAGCGTATTCATGAGAAGTATACGTGGCAAATTTACTCCGACCGCCTGCTGACTCTCACTGGAGTCTACGGCTTCTGGAAGCATGTGACCAACCTTGACCGCCGCGAGAGCAAGCGTTACCTTGAGATGTTCTATGCCCTCAAATACCGCATGCTGGCTGAGTCTGTGCCCCTTGCTGTCGAGTAA 2409 0.4832 MALTRSHSLKERLDETLAGQRNEILALLARIEAKGKGILQHHQVIAEFEEIPEEKRQKLYDGAFGEVLRSTQEAIVLPPFVALAVRPRPGVWEYLRVNVHALVVDELRPAEYLKFKEELVDGSSNGNFVLELDFEPFNASFPRPTLNKSIGNGVEFLNRHLSAKLFHGKESMQPLLEFLRLHSYNGKTMMLNDRIQNLNSLQHVLRKAEDYLVTLAPETPYSVFEHKFQEIGLERGWGDTAERVLEMIQLLLDLLEAPDPCTLETFLGRIPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLNRIKKQGLDITPRILILTRLLPDAVGTTCGQRLEKVFGTEHCHILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAHELAKELKGKPDLIVGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPESDIYWKKFDDKYHFSCQFTADLFAMNHTDFIITSTFQEIAGSKDTVGQYESHTHFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTETERRLTSFHPEIEELLYSNVENEEHICVLKDRTKPIIFTMARLDRVKNITGLVEWYGKNARLRELVNLVVVAGDRRKESKDLEEKAEMKKMYGLIETYKLNGQFRWISSQMNRVRNGELYRVICDTKGAFVQPAIYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVNGKSGYHIDPYHGDRAAEILVDFFEKSKADPSHWDKISQGGLKRIHEKYTWQIYSDRLLTLTGVYGFWKHVTNLDRRESKRYLEMFYALKYRMLAESVPLAVE* 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2841 802 TIGRFAM sucr_synth: sucrose synthase 21 799 IPR012820 GO:0005985|GO:0016157
Amo13g2841 802 Gene3D Glycogen Phosphorylase B; 524 750 - -
Amo13g2841 802 PANTHER SUCROSE SYNTHASE 3 802 - -
Amo13g2841 802 Pfam Sucrose synthase 5 550 IPR000368 GO:0005985|GO:0016157
Amo13g2841 802 Coils Coil 10 30 - -
Amo13g2841 802 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 292 760 - -
Amo13g2841 802 Gene3D - 22 142 - -
Amo13g2841 802 PANTHER - 3 802 IPR012820 GO:0005985|GO:0016157
Amo13g2841 802 Pfam Glycosyl transferases group 1 561 735 IPR001296 GO:0016757
Amo13g2841 802 Gene3D - 143 272 - -
Amo13g2841 802 Gene3D Glycogen Phosphorylase B; 277 792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2841 Amo-Chr13 62138722 62144544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2841 2 802 Glycosyltransferase AT3G43190 84.769 0.0 1434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2841 K00695 - gmx:100806761 1503.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2841 13 62138722 62144544 Amo13g2841 13 62138722 62144544 ECH
Amo13g2841 13 62138722 62144544 Amo03g1579 03 43113737 43119718 hybridization
Amo01g2686 01 97701597 97705901 Amo13g2841 13 62138722 62144544 PCT
Amo13g2841 13 62138722 62144544 Amo01g2686 01 97701597 97705901 PCT