Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1579 ATGGCTTTGACTCGCTCTCACTCTCTCAAAGAGAGGCTCGATGAGACTCTCGCTGGACAGAGGAATGAGATTTTGGCCCTTCTTGCTAGGATCGAGGCTAAGGGCAAGGGAATCCTGCAGCACCACCAGGTCATTGCTGAGTTTGAAGAAATCCCTGAAGAGAAGAGGCAGAAGCTATATGATGGTGCCTTTGGAGAAGTTCTGAGATCTACTCAGGAAGCCATAGTGCTGCCACCATTTGTTGCTTTGGCAGTTCGTCCAAGGCCTGGTGTTTGGGAGTACCTGCGCGTGAATGTGCACGCGCTTGTTGTTGATGAGTTGCGTCCTGCTGAGTACCTCAAGTTCAAGGAAGAGCTTGTTGATGGCAGTTCCAACGGCAACTTTGTGCTTGAGTTGGACTTTGAGCCTTTTAACGCATCCTTCCCCCGCCCAACACTTAACAAGTCAATTGGGAATGGCGTTGAGTTCCTTAACCGCCACCTTTCCGCTAAGCTTTTCCATGGCAAGGAGAGCATGCAGCCATTGCTGGAGTTCCTAAGGCTTCATAGTTACAATGGAAAGACTATGATGTTGAATGACAGGATTCAAAACCTGAATTCTCTTCAACATGTTCTGAGAAAGGCAGAGGACTATCTGGTTACACTTGCTCCCGAAACACCCTACTCAGTATTCGAGCACAAATTCCAGGAGATTGGTTTGGAGAGAGGGTGGGGTGACACCGCCGAGCGTGTCCTCGAGATGATCCAGCTTCTCCTGGATCTCCTCGAGGCACCTGACCCTTGTACCCTGGAGACATTCCTTGGAAGGATCCCTATGGTCTTCAATGTGGTGATCCTTTCTCCCCATGGTTACTTTGCTCAAGACAATGTCTTGGGATACCCTGATACTGGTGGCCAGGTTGTTTACATCTTGGATCAAGTTCGTGCATTGGAGAATGAGATGCTCAACCGCATCAAGAAACAAGGCTTGGACATCACACCTCGCATTCTCATTCTCACCCGGCTTCTCCCTGATGCCGTTGGAACTACTTGCGGCCAACGTCTTGAGAAGGTATTCGGCACTGAACATTGCCACATTCTTCGAGTTCCCTTTAGAACAGAGAAAGGAATTGTTCGCAAATGGATCTCAAGATTCGAAGTCTGGCCCTACCTAGAAACTTACACTGAGGATGCTGCTCATGAACTTGCCAAAGAGTTGAAAGGCAAGCCAGATCTGATTGTTGGAAACTACAGTGATGGAAACATTGTTGCCTCTCTGTTAGCACACAAATTGGGTGTAACTCAGTGTACCATTGCTCATGCACTTGAGAAGACCAAATATCCAGAATCTGACATTTACTGGAAGAAATTTGATGACAAATATCACTTCTCATGCCAATTCACAGCTGATCTTTTTGCCATGAACCACACAGATTTCATCATCACCAGTACCTTCCAAGAAATTGCTGGAAGCAAGGACACTGTTGGACAATATGAGAGCCACACTCACTTCACCCTTCCTGGACTCTACCGTGTTGTCCACGGCATTGATGTCTTCGATCCAAAGTTTAACATTGTCTCTCCCGGTGCCGACATGAGCATTTACTTCCCATACACCGAAACCGAGCGCAGGTTGACATCCTTCCACCCGGAGATTGAAGAGCTACTGTATAGCAATGTAGAGAACGAGGAGCACATATGTGTACTGAAGGATCGTACCAAGCCAATTATCTTCACCATGGCGAGGTTGGACCGTGTGAAGAACATCACAGGACTTGTTGAGTGGTACGGCAAGAACGCCCGCCTTAGGGAGCTTGTGAACCTTGTCGTGGTCGCTGGAGACAGGCGGAAGGAGTCCAAGGACTTGGAAGAGAAAGCTGAGATGAAGAAGATGTATGGCCTCATTGAGACTTACAAGCTAAACGGCCAATTCAGGTGGATCTCCTCACAAATGAACAGAGTGAGGAATGGAGAGCTTTACCGTGTGATCTGTGACACCAAAGGTGCCTTCGTGCAGCCTGCGATCTACGAAGCGTTCGGTCTGACAGTTGTTGAGGCCATGACTTGTGGATTGCCAACATTTGCAACTTGCAATGGTGGTCCTGCTGAGATCATTGTCAATGGAAAATCGGGCTACCATATTGATCCTTACCATGGTGATCGCGCAGCTGAGATTCTTGTTGATTTCTTCGAGAAGAGCAAGGCTGATCCATCTCACTGGGACAAGATCTCTCAGGGTGGTCTCAAGCGTATTCATGAGAAGTATACGTGGCAAATTTACTCCGACCGCCTGCTGACTCTCACTGGAGTCTACGGCTTCTGGAAGCATGTGACCAACCTTGACCGCCGCGAGAGCAAGCGTTACCTTGAGATGTTCTATGCCCTCAAATACCGCATGCTGGCTGAGTCTGTGCCCCTTGCTGTCGAGTAA 2409 0.4844 MALTRSHSLKERLDETLAGQRNEILALLARIEAKGKGILQHHQVIAEFEEIPEEKRQKLYDGAFGEVLRSTQEAIVLPPFVALAVRPRPGVWEYLRVNVHALVVDELRPAEYLKFKEELVDGSSNGNFVLELDFEPFNASFPRPTLNKSIGNGVEFLNRHLSAKLFHGKESMQPLLEFLRLHSYNGKTMMLNDRIQNLNSLQHVLRKAEDYLVTLAPETPYSVFEHKFQEIGLERGWGDTAERVLEMIQLLLDLLEAPDPCTLETFLGRIPMVFNVVILSPHGYFAQDNVLGYPDTGGQVVYILDQVRALENEMLNRIKKQGLDITPRILILTRLLPDAVGTTCGQRLEKVFGTEHCHILRVPFRTEKGIVRKWISRFEVWPYLETYTEDAAHELAKELKGKPDLIVGNYSDGNIVASLLAHKLGVTQCTIAHALEKTKYPESDIYWKKFDDKYHFSCQFTADLFAMNHTDFIITSTFQEIAGSKDTVGQYESHTHFTLPGLYRVVHGIDVFDPKFNIVSPGADMSIYFPYTETERRLTSFHPEIEELLYSNVENEEHICVLKDRTKPIIFTMARLDRVKNITGLVEWYGKNARLRELVNLVVVAGDRRKESKDLEEKAEMKKMYGLIETYKLNGQFRWISSQMNRVRNGELYRVICDTKGAFVQPAIYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVNGKSGYHIDPYHGDRAAEILVDFFEKSKADPSHWDKISQGGLKRIHEKYTWQIYSDRLLTLTGVYGFWKHVTNLDRRESKRYLEMFYALKYRMLAESVPLAVE* 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1579 802 TIGRFAM sucr_synth: sucrose synthase 21 799 IPR012820 GO:0005985|GO:0016157
Amo03g1579 802 Gene3D Glycogen Phosphorylase B; 524 750 - -
Amo03g1579 802 PANTHER SUCROSE SYNTHASE 3 802 - -
Amo03g1579 802 Pfam Sucrose synthase 5 550 IPR000368 GO:0005985|GO:0016157
Amo03g1579 802 Coils Coil 10 30 - -
Amo03g1579 802 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 292 760 - -
Amo03g1579 802 Gene3D - 22 142 - -
Amo03g1579 802 PANTHER - 3 802 IPR012820 GO:0005985|GO:0016157
Amo03g1579 802 Pfam Glycosyl transferases group 1 561 735 IPR001296 GO:0016757
Amo03g1579 802 Gene3D - 143 272 - -
Amo03g1579 802 Gene3D Glycogen Phosphorylase B; 277 792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1579 Amo-Chr3 43113737 43119718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1579 2 802 Glycosyltransferase AT3G43190 84.769 0.0 1434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1579 K00695 - gmx:100806761 1503.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2841 13 62138722 62144544 Amo03g1579 03 43113737 43119718 hybridization
Amo01g2686 01 97701597 97705901 Amo03g1579 03 43113737 43119718 PCT
Amo03g1579 03 43113737 43119718 Amo01g2686 01 97701597 97705901 PCT