Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2564 ATGGAGAGAAAAATTCATGTGGTGCCTGTGGTGTTGTTCTTGTGGGTTTGTACTTGTGTAACTGCTTCTGTTACATATGATCACAAATCTCTTATTATAAATGGGAAAAGAAGGATCTTGATATCTGGCTCCATTCACTATCCAAGAAGCACACCCCAGATGTGGCCGGACCTTATTCAAAAGGCCAAAGACGGCGGCCTTGATGTCATTCAGACCTATGTCTTCTGGAATGGACATGAGCCTTCTCCTGGAAATTATTATTTTCAAGATAGGTATGACTTGGTGAGATTCGTCAAGCTGGTTCAACAAGCTGGCCTTTATGTTCATCTCCGCATTGGTCCTTATGTTTGTGCTGAATGGAACTTCGGGGGATTCCCTATTTGGCTAAAATATGTTCCGGGTATTGAGTTCAGAACAGACAATGGACCTTTCAAGGCGGCAATGCAAAAATTCACTCAGAAAATTGTAAGCTTGATGAAATCAGAGGGGTTGTTTCAAAGCCAGGGAGGTCCAATAATCATGTCTCAGATAGAGAATGAGTATGGACCAGTGGAGTGGGAAATTGGTGCTCCTGGAAGATCATACACAAGATGGGCTGCATCAATGGCTGTGGCTCTTGACACTGGTGTTCCATGGGTTATGTGCAAGCAACAAGATGCTCCTGATCCTGTTATTGACACCTGCAATGCCTTCTACTGCGAAGGCTTCACTCCCAACAAGAATTACAAGCCCAAGATGTGGACTGAGAATTGGACTGGCTGGTACACTGCTTTTGGTGGCGCAACCCCCATCAGACCAGCAGAAGACATAGCATTCTCGGTTGCCAGATTCATTCAGAATCGCGGCTCGTTTGTTAATTACTATATGTATCATGGAGGAACTAACTTCGGCCGCACGGCTGCCGGCCGTTTCATCGCCACAAGCTATGACTACGACGCTCCCCTAGACGAATATGGACTACCAAATGAACCAAAATGGACTCATTTGAGAGATTTGCATAAAGCAATTAAACAATGTGAGCCATCTTTGGTGGCTGTGGATCCAACACTTATACTCATTGCTAACAACATTGAGGCACATGTCTACAAGACAACCACTTCCTGTGCTGCATTCCTTGCAAATTACAACACCGGATCTTCCGCGAAAGTTAGATTTGGAAACGGGGTATATGATGTACCGGCTTGGTCTATTAGTATCCTTCCTGACTGCAAGACTGAAGTTTTCAACACTGCAAAGGTTAGTGCCCTGAGATTCGAGAGGAAGATGACTCCGGTAATCGGTAGATTTGGTTGGCTGTCATTCAATGAAGTACCCGAGTCGTCGGGTCCAAATGATCGCCTTACTGCAGATTCACTCTTGGAGCAGGTTTATGTAACCAAGGACTCTTCAGATTATTTGTGGTACATGACAGATGTCAACATTAGCCCTAATGAAGGTTTCCTAAGGAATGGTCAATCTCCTGTTCTTACAGCAATGTCAGCAGGGCATGTTCTGCATGTTTTCATTAATGGACAACTTTCAGGAACTGCGTATGGTGGATTGGATAATCCTAAGTTGACATTTAGTGACAGTGTTAAGCTAAGGGCTGGAAACAACAAGATTTCTTTACTTAGTGTCGCCGTCGGTCTCCCGAATGTGGGTACACACTTTGAGAAATGGAATGCTGGGGTGTTAGGTCCAGTCACATTGAAGGGTCTAAATGAAGGGACAAGAGACCTATCTAAGCAGAAATGGTCTTACAAGGTTGGTCTGAAAGGCGAATCATTGAGCCTTCATACTGAAAGTGGGAGTAGCTCTGTTGATTGGGTACAAGGATCACTGCTAGCTGTAAAACAACCTTTGACATGGTACAAGACAACTTTTAGCGCTCCAGCCGGCAATGAACCGTTGGCTTTAGATATGAGTACCATGGGAAAGGGTGAAATATGGATAAATGGTCAGAGCATCGGTCGCCATTGGCCTGGATACAAGGCAGGCGGTAATTGTGGTGCTTGCAACTATGCCGGAACTTACACTGAGAAGAAATGCCTTACAAACTGTGGACAACCTTCCCAGAGATGGTACCATGTTCCTCGCGCATGGCTAAGACCAGGTGGGAACTCCTTGGTTGTGTTTGAGGAGTGGGGAGGAAATCCTGCAGGGATTTCTTTGGTGAAGAGAACATGA 2166 0.4511 MERKIHVVPVVLFLWVCTCVTASVTYDHKSLIINGKRRILISGSIHYPRSTPQMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFQDRYDLVRFVKLVQQAGLYVHLRIGPYVCAEWNFGGFPIWLKYVPGIEFRTDNGPFKAAMQKFTQKIVSLMKSEGLFQSQGGPIIMSQIENEYGPVEWEIGAPGRSYTRWAASMAVALDTGVPWVMCKQQDAPDPVIDTCNAFYCEGFTPNKNYKPKMWTENWTGWYTAFGGATPIRPAEDIAFSVARFIQNRGSFVNYYMYHGGTNFGRTAAGRFIATSYDYDAPLDEYGLPNEPKWTHLRDLHKAIKQCEPSLVAVDPTLILIANNIEAHVYKTTTSCAAFLANYNTGSSAKVRFGNGVYDVPAWSISILPDCKTEVFNTAKVSALRFERKMTPVIGRFGWLSFNEVPESSGPNDRLTADSLLEQVYVTKDSSDYLWYMTDVNISPNEGFLRNGQSPVLTAMSAGHVLHVFINGQLSGTAYGGLDNPKLTFSDSVKLRAGNNKISLLSVAVGLPNVGTHFEKWNAGVLGPVTLKGLNEGTRDLSKQKWSYKVGLKGESLSLHTESGSSSVDWVQGSLLAVKQPLTWYKTTFSAPAGNEPLALDMSTMGKGEIWINGQSIGRHWPGYKAGGNCGACNYAGTYTEKKCLTNCGQPSQRWYHVPRAWLRPGGNSLVVFEEWGGNPAGISLVKRT* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2564 721 Gene3D Glycosidases 17 340 - -
Amo13g2564 721 SUPERFAMILY (Trans)glycosidases 24 340 IPR017853 -
Amo13g2564 721 Gene3D - 590 721 - -
Amo13g2564 721 PRINTS Glycosyl hydrolase family 35 signature 34 51 IPR001944 GO:0004553|GO:0005975
Amo13g2564 721 PRINTS Glycosyl hydrolase family 35 signature 55 73 IPR001944 GO:0004553|GO:0005975
Amo13g2564 721 PRINTS Glycosyl hydrolase family 35 signature 110 129 IPR001944 GO:0004553|GO:0005975
Amo13g2564 721 PRINTS Glycosyl hydrolase family 35 signature 167 182 IPR001944 GO:0004553|GO:0005975
Amo13g2564 721 PRINTS Glycosyl hydrolase family 35 signature 246 261 IPR001944 GO:0004553|GO:0005975
Amo13g2564 721 PRINTS Glycosyl hydrolase family 35 signature 283 298 IPR001944 GO:0004553|GO:0005975
Amo13g2564 721 PRINTS Glycosyl hydrolase family 35 signature 303 319 IPR001944 GO:0004553|GO:0005975
Amo13g2564 721 PRINTS Glycosyl hydrolase family 35 signature 612 626 IPR001944 GO:0004553|GO:0005975
Amo13g2564 721 PRINTS Glycosyl hydrolase family 35 signature 639 655 IPR001944 GO:0004553|GO:0005975
Amo13g2564 721 SUPERFAMILY Galactose-binding domain-like 577 717 IPR008979 -
Amo13g2564 721 SUPERFAMILY Galactose-binding domain-like 397 567 IPR008979 -
Amo13g2564 721 PANTHER BETA-GALACTOSIDASE 7 721 - -
Amo13g2564 721 Pfam Glycosyl hydrolases family 35 30 335 IPR031330 -
Amo13g2564 721 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 169 181 IPR019801 GO:0004553|GO:0005975
Amo13g2564 721 Gene3D - 439 576 - -
Amo13g2564 721 PANTHER BETA-GALACTOSIDASE RELATED 7 721 IPR001944 GO:0004553|GO:0005975
Amo13g2564 721 Pfam Beta-sandwich domain in beta galactosidase 344 413 IPR041392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2564 Amo-Chr13 47676900 47682569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2564 7 721 Glycoside Hydrolase AT3G52840 67.832 0.0 1069
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2564 - - gmx:100781959 1219.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2564 13 47676900 47682569 Amo03g1168 03 26770578 26775083 hybridization
Amo01g2769 01 98485002 98490063 Amo13g2564 13 47676900 47682569 PCT
Amo13g2564 13 47676900 47682569 Amo01g2769 01 98485002 98490063 PCT