Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g1168 TATACGATGGAGAGAAAAATTCATGTGGTGCCTGTGGTGTTGTTCTTGTGGGTTTGTACTTGTGTAACTGCTTCTGTTACATACGATCACAAATCTCTTATTATAAATGGGAAAAGAAGGATCTTGATATCTGGCTCCATTCACTATCCAAGAAGCACACCCCAGATGTGGCCGGACCTTATTCAAAAGGCCAAAGACGGCGGCCTTGATGTCATTCAGACCTATGTCTTCTGGAATGGACATGAGCCTTCTCCTGGAAATTATTATTTTCAAGATAGGTATGACTTGGTGAGATTCGTCAAGCTGGCTCAACAAGCTGGCCTTTATGTTCATCTCCGCATTGGTCCTTATGTTTGTGCTGAATGGAACTTCGGGGGATTCCCTATTTGGCTAAAATATGTTCCGGGTATTGAGTTCAGAACAGACAATGGACCTTTCAAGGCGGCAATGCAAAAATTCACTCAGAAAATTGTAAGCTTGATGAAATCAGAGGGGTTGTTTCAAAGCCAGGGAGGTCCAATAATCATGTCTCAGATAGAGAATGAGTATGGACCAGTGGAATGGGAAATTGGTGCTCCTGGAAGATCATACACAAGATGGGCTGCATCAATGGCTGTGGCTCTTGACACTGGTGTTCCATGGGTTATGTGCAAGCAACAAGATGCTCCTGATCCTGTTATTGACACCTGCAATGCCTTCTACTGCGAAGGCTTCACTCCCAACAAGAATTACAAGCCCAAGATGTGGACTGAGAATTGGACTGGCTGGTACACTGCTTTTGGTGGCGCAACCCCCATCAGACCAGCAGAAGACATAGCATTCTCGGTTGCCAGATTCATTCAGAATCGCGGCTCGTTTGTTAATTACTATATGTATCATGGAGGAACTAACTTCGGCCGCACGGCTGCTGGCCGTTTCATTGCCACAAGCTATGACTACGACGCTCCCCTAGACGAATATGGACTACCAAATGAACCAAAATGGACTCATTTGAGAGATTTGCATAAAGCAATTAAACAATGTGAGCCATCTTTGGTGGCTGTGGATCCAACACTTACACTCATTGCTAACAACATTGAGGCACATGTCTACAAGACAACCACTTCCTGTGCTGCATTCCTTGCAAATTACAACACCGGATCTTCCGCGAAAGTTAGATTTGGAAACGGGGTGTATGATGTACCGGCTTGGTCTATTAGTATCCTTCCTGACTGCAAGACTGAAGTTTTCAACACTGCAAAGGTTAGTGCCCTGAGATTCGAGAGGAAGATGACTCCAGTAATCGGTAGATTTGGTTGGCTGTCATTCAATGAAGTACCCGAGTCGTCGGGTCCAAATGATCGCCTTACTGCAGATTCACTCTTGGAGCAGGTTTATGTAACCAAGGACTCTTCAGATTATTTGTGGTACATGACAGATGTCAACATTAGCCCTAATGAAGGTTTCCTAAGGAATGGTCAATCTCCTGTTCTTACAGCAATGTCAGCAGGGCATGTTCTGCATGTTTTCATTAATGGACAACTTTCAGGAACTGCGTATGGTGGATTGGATAATCCTAAGTTGACATTTAGTGACAGTGTTAAGCTAAGGGCTGGAAACAACAAGATTTCTTTACTTAGTGTCGCCGTCGGTCTCCCGAATGTGGGTACACACTTTGAGAAATGGAATGCTGGGGTGTTAGGTCCAGTCACATTGAAGGGTCTAAATGAAGGGACAAGAGACCTATCTAAGCAGAAATGGTCTTACAAGGTTGGTCTGAAAGGCGAATCATTGAGCCTTCATACTGAAAGTGGGAGTAGCTCTGTTGATTGGGTACAAGGATCACTGCTAGCTGTAAAACAACCTTTGACATGGTACAAGACAACTTTTAGCGCTCCAGCCGGCAATGAACCGTTGGCTTTAGATATGAGTACCATGGGAAAGGGTGAAATATGGATAAATGGTCAGAGCATCGGTCGCCATTGGCCTGGATACAAGGCAGGCGGTAATTGTGGTGCTTGCAACTATGCTGGAACTTACACTGAGAAGAAATGCCTTACAAACTGTGGACAACCTTCCCAGAGATGGTACCATGTTCCTCGCGCATGGCTAAGACCAGGTGGGAACTCCTTGGTTGTGTTTGAGGAGTGGGGAGGAAATCCTGCAGGGATTTCTTTGGTGAAGAGAACATGA 2172 0.4503 YTMERKIHVVPVVLFLWVCTCVTASVTYDHKSLIINGKRRILISGSIHYPRSTPQMWPDLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFQDRYDLVRFVKLAQQAGLYVHLRIGPYVCAEWNFGGFPIWLKYVPGIEFRTDNGPFKAAMQKFTQKIVSLMKSEGLFQSQGGPIIMSQIENEYGPVEWEIGAPGRSYTRWAASMAVALDTGVPWVMCKQQDAPDPVIDTCNAFYCEGFTPNKNYKPKMWTENWTGWYTAFGGATPIRPAEDIAFSVARFIQNRGSFVNYYMYHGGTNFGRTAAGRFIATSYDYDAPLDEYGLPNEPKWTHLRDLHKAIKQCEPSLVAVDPTLTLIANNIEAHVYKTTTSCAAFLANYNTGSSAKVRFGNGVYDVPAWSISILPDCKTEVFNTAKVSALRFERKMTPVIGRFGWLSFNEVPESSGPNDRLTADSLLEQVYVTKDSSDYLWYMTDVNISPNEGFLRNGQSPVLTAMSAGHVLHVFINGQLSGTAYGGLDNPKLTFSDSVKLRAGNNKISLLSVAVGLPNVGTHFEKWNAGVLGPVTLKGLNEGTRDLSKQKWSYKVGLKGESLSLHTESGSSSVDWVQGSLLAVKQPLTWYKTTFSAPAGNEPLALDMSTMGKGEIWINGQSIGRHWPGYKAGGNCGACNYAGTYTEKKCLTNCGQPSQRWYHVPRAWLRPGGNSLVVFEEWGGNPAGISLVKRT* 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g1168 723 PANTHER BETA-GALACTOSIDASE RELATED 8 723 IPR001944 GO:0004553|GO:0005975
Amo03g1168 723 PANTHER BETA-GALACTOSIDASE 8 723 - -
Amo03g1168 723 SUPERFAMILY Galactose-binding domain-like 399 569 IPR008979 -
Amo03g1168 723 Pfam Glycosyl hydrolases family 35 32 337 IPR031330 -
Amo03g1168 723 SUPERFAMILY Galactose-binding domain-like 579 719 IPR008979 -
Amo03g1168 723 Gene3D Glycosidases 19 342 - -
Amo03g1168 723 Pfam Beta-sandwich domain in beta galactosidase 347 415 IPR041392 -
Amo03g1168 723 PRINTS Glycosyl hydrolase family 35 signature 305 321 IPR001944 GO:0004553|GO:0005975
Amo03g1168 723 PRINTS Glycosyl hydrolase family 35 signature 641 657 IPR001944 GO:0004553|GO:0005975
Amo03g1168 723 PRINTS Glycosyl hydrolase family 35 signature 57 75 IPR001944 GO:0004553|GO:0005975
Amo03g1168 723 PRINTS Glycosyl hydrolase family 35 signature 285 300 IPR001944 GO:0004553|GO:0005975
Amo03g1168 723 PRINTS Glycosyl hydrolase family 35 signature 112 131 IPR001944 GO:0004553|GO:0005975
Amo03g1168 723 PRINTS Glycosyl hydrolase family 35 signature 248 263 IPR001944 GO:0004553|GO:0005975
Amo03g1168 723 PRINTS Glycosyl hydrolase family 35 signature 614 628 IPR001944 GO:0004553|GO:0005975
Amo03g1168 723 PRINTS Glycosyl hydrolase family 35 signature 36 53 IPR001944 GO:0004553|GO:0005975
Amo03g1168 723 PRINTS Glycosyl hydrolase family 35 signature 169 184 IPR001944 GO:0004553|GO:0005975
Amo03g1168 723 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 171 183 IPR019801 GO:0004553|GO:0005975
Amo03g1168 723 Gene3D - 592 723 - -
Amo03g1168 723 Gene3D - 441 578 - -
Amo03g1168 723 SUPERFAMILY (Trans)glycosidases 26 342 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g1168 Amo-Chr3 26770578 26775083 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo03g1168 9 723 Glycoside Hydrolase AT3G52840 67.832 0.0 1070
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g1168 - - gmx:100810170 1220.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2564 13 47676900 47682569 Amo03g1168 03 26770578 26775083 hybridization
Amo01g2769 01 98485002 98490063 Amo03g1168 03 26770578 26775083 PCT
Amo03g1168 03 26770578 26775083 Amo01g2769 01 98485002 98490063 PCT