Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g1965 TGGATAAGCCTTTCTTCTTTGTTTTTCTCTTTTCTCTGTAATTCACAATATATATATATATATATATATATATATATAAAAGAAAAAGCCACAAATTCCCAACACACACTTCCATTTTCAACGAGCAATGCAGTCGCCGGAAAACTTCTGATTCCGGCAACCACCACACTCTGCCACCTTTCTTCTTCTTCTTCTCTCTTCCACTTTCCACCAATGGCCGCTGTTACTTCTTCTTTCTCTCTCTCTACTCTTTCACAGTGCTCGCAGAGGAAGAACCTTTCCCTCTCTTCGTCTACTCGTTTTTTGGGAACCAATTCCGATTCTTTCCGATTGGGACCGAATTTCTCGCTACTATATGTTGCCGTTCGAGCTTCCGATTCCGCTTCCAGAGTGATTGTTCGGTGTTCCTCTTCCCTCTCAGATATTCCAACTGTTTCGGAGACAAAGTTAGGTTTCCTTAAAGCCTATAAACGACCAATCCCTAGTATCTACAACAGTGTGTTGCAGGAGCTGATTGTCCAGCATCATTTGATGAGATACAAGAGATCATACCAGTATGACCCTGTATTTGCTCTTGGCTTTGTCACTGTATATGATCAACTCATGGAAGGGTATCCTAGTGATGAGGATCGGGATGCTATCTTCCAGGCATACATTAATGCATTGAAGGAAGATCCAGAACGATACAGAGCAGATGCACAGAAGTTGGAAGAATGGGCACGGGCTCAAAACTCAACCTCCCTGATTGAGTTTTCATCCAGAGAAGGAGAAGTTGAGGGAATARTAAAGGATATTGCAGAAAGAGCTGGSGCAAAGGGGAATTTTAGCTATAGTCGCTTCTTTGCAATTGGCCTCTTTCGCCTTCTTGAATTGGCAAATGCAATGGAACCAACAATTTTGGAAAAGCTTTGTGCAGCTTTAAATGTTAACAAAAGAAGTGTTGATCGGGACTTGGATGTGTATCGTAATCTACTTTCCAAGTTGGTTCAAGCTAAAGAGCTGCTAAGGGAATATGTTGACAGGGAGAAGAAGAAGAGAGAAGAAAGGTCTGAACCACAAAAGGCAAATGAGGCCATCACAAAATGTTTGGGACAACAGCAAATTTCTGCCCTGAAGTGA 1119 0.4182 WISLSSLFFSFLCNSQYIYIYIYIYIKEKATNSQHTLPFSTSNAVAGKLLIPATTTLCHLSSSSSLFHFPPMAAVTSSFSLSTLSQCSQRKNLSLSSSTRFLGTNSDSFRLGPNFSLLYVAVRASDSASRVIVRCSSSLSDIPTVSETKLGFLKAYKRPIPSIYNSVLQELIVQHHLMRYKRSYQYDPVFALGFVTVYDQLMEGYPSDEDRDAIFQAYINALKEDPERYRADAQKLEEWARAQNSTSLIEFSSREGEVEGIXKDIAERAGAKGNFSYSRFFAIGLFRLLELANAMEPTILEKLCAALNVNKRSVDRDLDVYRNLLSKLVQAKELLREYVDREKKKREERSEPQKANEAITKCLGQQQISALK* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g1965 372 PANTHER PHOTOSYSTEM II BIOGENESIS PROTEIN 72 360 - -
Amo13g1965 372 Hamap Protein Thf1 [thf1]. 139 347 IPR017499 GO:0010207|GO:0015979
Amo13g1965 372 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 72 360 IPR017499 GO:0010207|GO:0015979
Amo13g1965 372 Pfam Thylakoid formation protein 144 349 IPR017499 GO:0010207|GO:0015979
Amo13g1965 372 Coils Coil 321 351 - -
Amo13g1965 372 TIGRFAM PS_II_psb29: photosystem II biogenesis protein Psp29 141 346 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g1965 Amo-Chr13 29731500 29735857 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g1965 - - aip:107632658 554.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1965 13 29731500 29735857 Amo13g1965 13 29731500 29735857 ECH
Amo13g1965 13 29731500 29735857 Amo03g0661 03 12192655 12196452 hybridization
Amo08g1109 08 18640760 18642892 Amo13g1965 13 29731500 29735857 PCT
Amo13g1965 13 29731500 29735857 Amo08g1109 08 18640760 18642892 PCT