Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo08g1109 ATGGCAGCTCTCACTTCTTTGTCCTTCTCATCATCATTCACTCAGTGCTGTGAGAGAAAAGCAACTGTGTCYTCATCAACTCATCGTTTCTTTGTCTCTTCAAGTTCTGAAGTCTTCGGTTTTAGGACCATTTTSTCGTACCATTATGGGGGTGTTCGAGCTTCTWGTTCCTCATCCAAAATGGTTGTYCAATGCATGTCTTCTGCCACAGATGCTCCTACTGTTTCTGAGACAAAGTTAAATTTCCTTAAGGCATATAAGCGACCAATCCCAAGTATCTACAACACTGTTCTGCAGGAGCTCATTGTGCAGCAACATTTGATGAGATATAAGAGATCGTATCGCTATGACCCTGTGTTTGCTCTTGGTTTTGTCACTGTTTATGATCAAYTCATGGAAGGGTATCCTAGTGATGAGGACCGAGATGCTATCTTCAAAGCATATATTAATGCTTTGAATGAAGATCCTGAACAATACAGAAAAGATGCTCAAAAGTTGGAAGAGTGGGCGAGGGCTCAAAACCTAACTTCCCTTGTTGAGTTTTCATCCAAAGATGGAGAAATTGAGGGGATCTTGAAGGACATAGCAGAAAGAGCAGGAAAGGGGGATTTCAGCTACAGTCGTTTCTTCGCAGTAGGACTATTTCGTCTTCTTGAGTTAACAAACGCAACAGAGCCAACAATTTTGGACAAGCTCTGCGCAGCTTTAAATATCAACAAAAAAAGTGTTGATCGGGACTTGGATGTGTATCGGAATCTGCTTTCCAAATTGGTTCAAGCAAAGGAGCTGCTAAAGGAATACGTTGAGAGGGAGAAGAAGAAAAGAGAAGAAAGAGCTGAACCCCAAAAGGCTAATGAGACCATTACAAAGTGTTTGGGACAACAACTGTCTGGTCAGCAGCTATGGTCTTATGAAAATAACATCTACTGA 930 0.414 MAALTSLSFSSSFTQCCERKATVSSSTHRFFVSSSSEVFGFRTIXSYHYGGVRASXSSSKMVVQCMSSATDAPTVSETKLNFLKAYKRPIPSIYNTVLQELIVQQHLMRYKRSYRYDPVFALGFVTVYDQXMEGYPSDEDRDAIFKAYINALNEDPEQYRKDAQKLEEWARAQNLTSLVEFSSKDGEIEGILKDIAERAGKGDFSYSRFFAVGLFRLLELTNATEPTILDKLCAALNINKKSVDRDLDVYRNLLSKLVQAKELLKEYVEREKKKREERAEPQKANETITKCLGQQLSGQQLWSYENNIY* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo08g1109 309 TIGRFAM PS_II_psb29: photosystem II biogenesis protein Psp29 71 275 IPR017499 GO:0010207|GO:0015979
Amo08g1109 309 Coils Coil 250 280 - -
Amo08g1109 309 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 1 289 IPR017499 GO:0010207|GO:0015979
Amo08g1109 309 Hamap Protein Thf1 [thf1]. 69 276 IPR017499 GO:0010207|GO:0015979
Amo08g1109 309 Pfam Thylakoid formation protein 74 278 IPR017499 GO:0010207|GO:0015979
Amo08g1109 309 PANTHER PHOTOSYSTEM II BIOGENESIS PROTEIN 1 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo08g1109 Amo-Chr8 18640760 18642892 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo08g1109 - - gmx:100814341 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo08g1109 08 18640760 18642892 Amo13g1965 13 29731500 29735857 PCT
Amo08g1109 08 18640760 18642892 Amo03g0661 03 12192655 12196452 PCT
Amo13g1965 13 29731500 29735857 Amo08g1109 08 18640760 18642892 PCT
Amo03g0661 03 12192655 12196452 Amo08g1109 08 18640760 18642892 PCT