Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo03g0661 TGGATAAGCCTTTCTTCATCGTTTTTGTCTTTTCTCTGTAATTCACAAAATATATATATAAAAGAAAAGGCCACAAATTCCCAACACACACTTCCATTTTCAACGAGCAATGCAGTCGCCGGAAAACTTCTGATTCCGGCAACCACCACACTCTGCCACCTTTCTTCTTCTTCTTCTCTCTTCCACTTTCCACCAATGGCCGCTGTTACTTCTTCTTTCTCTCTCTCTACTCTTTCACAGTGCTCGCAGAGGAAGAACCTTTCCTTCTCTTCGTCTACTCGTTTTTTGGGAACCAATTCCGATTCTTTCCGATTGGGACCGAATTTCTCGCTACTATATGTTGCCGTTCGAGCTTCCGATTCCGCTTCCAGAGTGATTGTTCGGTGTTCCTCTTCCCTCTCAGATATTCCAACTGTTTCGGAGACAAAGTTAGGTTTCCTTAAAGCCTATAAACGACCAATCCCTAGTATCTACAACAGTGTGTTGCAGGAGCTGATTGTCCAGCATCATTTGATGAGATACAAGAGATCATACCAGTATGACCCTGTATTTGCTCTTGGCTTTGTCACTGTATATGATCAACTCATGGAAGGGTATCCTAGTGATGAGGATCGGGATGCTATCTTCCAGGCATACATTAATGCATTGAAGGAAGATCCAGAACGATACAGAGCAGATGCACAGAAGTTGGAAGAATGGGCACGGGCTCAAAACTCAACCTCCCTGATTGAGTTTTCATCCAGAGAAGGAGAAGTTGAGGGAATACTAAAGGATATTGCAGAAAGAGCTGGAGCAAAGGGGAATTTTAGCTATAGTCGCTTCTTTGCAATTGGCCTCTTTCGCCTTCTTGAATTGGCAAATGCAATGGAACCAACAATTTTGGAAAAGCTTTGTGCAGCTTTAAATGTTAACAAAAGAAGTGTTGATCGGGACTTGGATGTGTATCGTAATCTACTTTCCAAGTTGGTTCAAGCTAAAGAGCTGCTAAGGGAATATGTTGACAGGGAGAAGAAGAAGAGAGAAGAAAGGTCTGAACCACAAAAGGCAAATGAGGCCATCACAAAATGTTTGGGACAACAGCAAATTTCTGCCCTGAAGTGA 1101 0.4269 WISLSSSFLSFLCNSQNIYIKEKATNSQHTLPFSTSNAVAGKLLIPATTTLCHLSSSSSLFHFPPMAAVTSSFSLSTLSQCSQRKNLSFSSSTRFLGTNSDSFRLGPNFSLLYVAVRASDSASRVIVRCSSSLSDIPTVSETKLGFLKAYKRPIPSIYNSVLQELIVQHHLMRYKRSYQYDPVFALGFVTVYDQLMEGYPSDEDRDAIFQAYINALKEDPERYRADAQKLEEWARAQNSTSLIEFSSREGEVEGILKDIAERAGAKGNFSYSRFFAIGLFRLLELANAMEPTILEKLCAALNVNKRSVDRDLDVYRNLLSKLVQAKELLREYVDREKKKREERSEPQKANEAITKCLGQQQISALK* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo03g0661 366 Hamap Protein Thf1 [thf1]. 133 341 IPR017499 GO:0010207|GO:0015979
Amo03g0661 366 TIGRFAM PS_II_psb29: photosystem II biogenesis protein Psp29 135 340 IPR017499 GO:0010207|GO:0015979
Amo03g0661 366 Pfam Thylakoid formation protein 138 343 IPR017499 GO:0010207|GO:0015979
Amo03g0661 366 PANTHER PHOTOSYSTEM II BIOGENESIS PROTEIN 66 354 - -
Amo03g0661 366 Coils Coil 315 345 - -
Amo03g0661 366 PANTHER PROTEIN THYLAKOID FORMATION 1, CHLOROPLASTIC 66 354 IPR017499 GO:0010207|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo03g0661 Amo-Chr3 12192655 12196452 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo03g0661 - - aip:107632658 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g1965 13 29731500 29735857 Amo03g0661 03 12192655 12196452 hybridization
Amo08g1109 08 18640760 18642892 Amo03g0661 03 12192655 12196452 PCT
Amo03g0661 03 12192655 12196452 Amo08g1109 08 18640760 18642892 PCT