Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo12g3065 | ATGGATAGAGTTAAGGATTTGGCATCAAAGAAGGCAGCAGTAATATTCACAAAGAGTTCATGTTGCATGTGCCATAGCATCACACAATTGTTCTATGAGCTTGGAGCAAGCCCTGCAGTTCATGAGCTTGACAATGATCCCTATGGAAGGCAAATGGAATGGGCCTTGAGAAGCTTGGGATGCAACCCTTCAGTCCCAGCAGTCTTCATTGGTGGAAAATTTGTTGGCTCTTCAAAAGATGTTATATCCCTCCATGTTGATGCAATTTTATTCCTAACCATTCAATTTGGGTACCTGATCATGGAGAAGGTAACAAGGTTGGCATCTGAAAAGGGAGTGGTGATATTCACAAAGAGTTCATGTTGCCTATGCTATGCTGTGAACATTCTGTTCCAAGAACTTGGGGTGAACCCAACAATTCATGAGATTGATAAGGACAATGAAGGAAGAGAAATGGAAAAAGCCATAACAAGGCTTGGTTGCACTGCACCTGTCCCTGCAGTGTTCATCGGAGGCAAGCTTGTGGGCTCCACCAATGAAGTTATGTCCCTTCATCTTAGTGGCTCCCTCATCCCACTCCTCAAGCCATATAGTGCTACTTTATCTTGA | 609 | 0.4368 | MDRVKDLASKKAAVIFTKSSCCMCHSITQLFYELGASPAVHELDNDPYGRQMEWALRSLGCNPSVPAVFIGGKFVGSSKDVISLHVDAILFLTIQFGYLIMEKVTRLASEKGVVIFTKSSCCLCYAVNILFQELGVNPTIHEIDKDNEGREMEKAITRLGCTAPVPAVFIGGKLVGSTNEVMSLHLSGSLIPLLKPYSATLS* | 203 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo12g3065 | 202 | ProSiteProfiles | Glutaredoxin domain profile. | 101 | 201 | - | - | |
| Amo12g3065 | 202 | SUPERFAMILY | Thioredoxin-like | 101 | 198 | IPR036249 | - | |
| Amo12g3065 | 202 | Gene3D | Glutaredoxin | 99 | 200 | - | - | |
| Amo12g3065 | 202 | Gene3D | Glutaredoxin | 1 | 96 | - | - | |
| Amo12g3065 | 202 | ProSiteProfiles | Glutaredoxin domain profile. | 1 | 100 | - | - | |
| Amo12g3065 | 202 | PANTHER | MONOTHIOL GLUTAREDOXIN-S2 PROTEIN | 101 | 199 | - | - | |
| Amo12g3065 | 202 | PANTHER | MONOTHIOL GLUTAREDOXIN-S2 PROTEIN | 1 | 90 | - | - | |
| Amo12g3065 | 202 | PANTHER | GLUTAREDOXIN | 101 | 199 | IPR011905 | - | |
| Amo12g3065 | 202 | CDD | GRX_GRXh_1_2_like | 113 | 193 | - | - | |
| Amo12g3065 | 202 | TIGRFAM | GlrX-like_plant: glutaredoxin-like family | 4 | 91 | IPR011905 | - | |
| Amo12g3065 | 202 | TIGRFAM | GlrX-like_plant: glutaredoxin-like family | 104 | 200 | IPR011905 | - | |
| Amo12g3065 | 202 | CDD | GRX_GRXh_1_2_like | 12 | 87 | - | - | |
| Amo12g3065 | 202 | PANTHER | GLUTAREDOXIN | 1 | 90 | IPR011905 | - | |
| Amo12g3065 | 202 | Pfam | Glutaredoxin | 14 | 75 | IPR002109 | - | |
| Amo12g3065 | 202 | Pfam | Glutaredoxin | 113 | 175 | IPR002109 | - | |
| Amo12g3065 | 202 | SUPERFAMILY | Thioredoxin-like | 1 | 90 | IPR036249 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo12g3065 | Amo-Chr12 | 118806350 | 118820920 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo12g3065 | 1 | 91 | Miscellaneous Gene Families | AT4G15670 | 47.253 | 4.94e-29 | 102 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo12g3065 | K03676 | - | vvi:100247747 | 182.956 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Amo16g0847 | 16 | 13614559 | 13615396 | Amo12g3065 | 12 | 118806350 | 118820920 | PCT | |
| Amo12g3065 | 12 | 118806350 | 118820920 | Amo16g0853 | 16 | 13780596 | 13780934 | PCT | |
| Amo12g3065 | 12 | 118806350 | 118820920 | Amo06g0356 | 06 | 5014785 | 5015203 | PCT |