Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2402 ATGGAGAGCACTAGCAACACCAACAACAAAGAGAGTAGTAGTAGTAGTAGTGGGAGGGTTCGGTTGTCAGAGGTGGTGGCAGATTGTGTTAAGAGGTGGTTTAGGGATACAATGAAGGAAGCTAAAGCTGGAGATGTTAGCATGCAGGTCTTGCTTGGTCAGATGTACTGTAGTGGTTATGGTGTTCCCAAAGATCCCCAAAAGGGAAGAGTTTGGCTGACCAGAGCATCAAAGACTCGTTCGTCGGTTTGGAAAGTTGGTGATAAGCGTCCAGGTTACAATGCTAGTGACTCTGATTCTGATGAAATGGAGGATTCTTAA 321 0.4548 MESTSNTNNKESSSSSSGRVRLSEVVADCVKRWFRDTMKEAKAGDVSMQVLLGQMYCSGYGVPKDPQKGRVWLTRASKTRSSVWKVGDKRPGYNASDSDSDEMEDS* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2402 106 MobiDBLite consensus disorder prediction 83 106 - -
Amo12g2402 106 MobiDBLite consensus disorder prediction 1 21 - -
Amo12g2402 106 Gene3D Tetratricopeptide repeat domain 20 93 IPR011990 GO:0005515
Amo12g2402 106 PANTHER EXPRESSED PROTEIN 5 105 - -
Amo12g2402 106 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 5 105 - -
Amo12g2402 106 SMART sel1 46 81 IPR006597 -
Amo12g2402 106 MobiDBLite consensus disorder prediction 1 22 - -
Amo12g2402 106 SUPERFAMILY HCP-like 39 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2402 Amo-Chr12 106373514 106375783 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2402 - - ahf:112728105 168.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2402 12 106373514 106375783 Amo12g2402 12 106373514 106375783 ECH
Amo12g2402 12 106373514 106375783 Amo02g2655 02 83003714 83008744 hybridization
Amo14g2925 14 124708710 124714141 Amo12g2402 12 106373514 106375783 PCT
Amo04g1856 04 85516067 85521400 Amo12g2402 12 106373514 106375783 PCT
Amo12g2402 12 106373514 106375783 Amo14g2925 14 124708710 124714141 PCT
Amo12g2402 12 106373514 106375783 Amo04g1856 04 85516067 85521400 PCT