Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g1856 ATGGATAGTAGCAGTGGAATTGAGAGCAATGGGCGTGTGCCACTTTCAGGGGTTGTTGCAGATTGTGTGAAACGGTGGTTCAGAGACACTCTGAAAGAAGCTAAAGCTGGGGACATAAACATGCAGGTCTTGGTAGGTCAGATGTATTACAGTGGTTATGGTGTTCCCAGAGATGACCAGAAGGGTAAAATTTGGTTGACTAGAGCATCGAGGGTTAGATCTTCAGTTTGGAAAGTTGGTGATAAGCATCCAGGTTATAATGCAAGTGATTCTGATTCTGATGAATTGAAGGAAGATTCTTAA 303 0.429 MDSSSGIESNGRVPLSGVVADCVKRWFRDTLKEAKAGDINMQVLVGQMYYSGYGVPRDDQKGKIWLTRASRVRSSVWKVGDKHPGYNASDSDSDELKEDS* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g1856 100 SUPERFAMILY HCP-like 32 71 - -
Amo04g1856 100 Gene3D Tetratricopeptide repeat domain 19 87 IPR011990 GO:0005515
Amo04g1856 100 PANTHER EXPRESSED PROTEIN 1 100 - -
Amo04g1856 100 SMART sel1 39 74 IPR006597 -
Amo04g1856 100 MobiDBLite consensus disorder prediction 81 100 - -
Amo04g1856 100 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 1 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g1856 Amo-Chr4 85516067 85521400 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g1856 - - gmx:100527576 159.458
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo14g2925 14 124708710 124714141 Amo04g1856 04 85516067 85521400 hybridization
Amo04g1856 04 85516067 85521400 Amo12g2402 12 106373514 106375783 PCT
Amo04g1856 04 85516067 85521400 Amo02g2655 02 83003714 83008744 PCT
Amo12g2402 12 106373514 106375783 Amo04g1856 04 85516067 85521400 PCT
Amo02g2655 02 83003714 83008744 Amo04g1856 04 85516067 85521400 PCT