Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g2401 ATGCCGCTCTCCAAGTACCACATTCGGAACGAGTACGGCCTCGCGGATCCCGAGCTGTACCGCGCCGCCGACGTTCGGGACGATCCGGAAGCTCTCCTTGAGGCCGTCGCCATGGGCGGCCTCGTCGGTCTCCTCCGCCAGCTCGGCGACCTCGCCGAGTTTGCTGCCGAGATCTTCCATGATTTACATGAAGAAGTAATGGCTACTGCTGCAAGAGGTCATGGACTTATGACTCGTGTTCAACAGCTTGAGGCTGAAGTTCCTTCACTTGAGAAGGCTTTTTTCTCTCAAACTCATCATTCATCCTTCTACACGAATGGAGGGGTTGATTGGCATCCTAATCTTCGTTCTGAACAGAATCTTGTTACTCAAGGAGATCTGCCTCGATTTGTAATGGATTCTTATGAAGAATGTCGTGGTCCTCCGAGACTTTTCCTTCTGGATAAGTTTGATGTGGCTGGTGCTGGGGCTTGCCTGAAGCGTTACACTGATCCGTCATTTTTTAAAATGGAATCAGCTTCATTTGAAACCAAAATGGTAGAAGTTCACAGGGAAAAGAGAATACGTAAAATCAAGCAGAAGAAAGGACAACGGTTGCGGGATGGCGAAGGCCCTAATGTTGCACCATCACATGCAAAATTGCATCAGCTGCTTCTTGAGGAGCGTATTGAGAATGGTTACACTGATCCTGCACGTCTTGTGAAGTTGAAGAAAAGACAGTTGAGCGGATCTGCAGTTGAAGTAAAAGATGGGAAAAGTTACATGACAAAGTTCCTGGAAACTGCCTCACCTGATCATAAAATGATTTATGAAACTTCAATTATTCCTTTGTCTGTAAAGCCTATGTCGGATGATACCAGTGAAGCAGGGATCAAAATGCTTGAAATCAGTGGCACTAGTCCTGTAAAGAGGAGATTGGGAAACGAAAACACCTACCCATCCCCTAACCAGCAGGAATCAGAACTAAAAGGATTTTCAGAAATGGATGGAAAGGCAAATGGAGATGTTGTGAAGGTGAAAGAACAAAAATTTTCTCGTGTGACAGATGAAATTTCTTCTAATCATCCCAAGTTTCCTATGGAAACAGAATTGGCAGTCGATGAACAAAAGAAAATAGAAGGGATCTTAGATGGGTACCATTCTGATACGATTAGTGAAGTTGACAATTATATGGATGCTTTAAACACCATGGAGTCAGAATTGGAAACAGACAATGAATGTAAACCTAAAAGGCGATTATTGAATATTCAAAAGGCAACAGACGGTGATGGCAAAGAAAACTATCAACCAGAGGCTCGGTTTTCATATTCTCAATCATTTGGAGATTCCTCAACGTCTGATGAGATTGGTTCATTCAAACAAGATAGAAATGAAGAACAAATTGAAGAGCATGCTCAGTTGTCTGATTCTCGCTCAACTGGGACATCCTCAATGTCAGACAATAGTTTGTTCAGAAGAGATGGCGATGATCATACGGAAATGCAATCTCACTTTTCAGATTCCCCATCTATTGGAAATTCTTCTATGTCAGATGACAATAGTTCTAGCAAGAAAGAAAGATCCCCTTCCCATCACACTGATTCATTAAGCTCTGTGGTTGAAAATATACAATCGGAGCCTATATTATCAACAAAAACCAAAATTTATGAACCAGAGGTTGAAGATACACTACCCAGACAGCCTCCCCATATTGTTGTTCATGATGCACCTGATGGTGAAGAAGAAATTTCTGATTCAGGTCAAGCCTCTAATGAACTGATGACTTCAGGACATGTATTGTGTTCTGTTCATGGCCCTGCTTCACCAGTGACTCTACCTCCACAGGCTCAATCAGATGAACTCCCATTTGACCCAGTTGAACTTAATTCAACAGTAGAAGAAGATGAAGAAAGAACAGATCGTATGAAATCTATGGTTGCTGAACCTGTCTCTCTCTCTGCAGTGAAAGAAGATGCTTGTCCTTTGGATTTGTCTGATAAAAATTCTCTAGACAAGTTGGATAATTATGATCCAAATGTTCAGTCTGATGATTTATTGCAATTTTCAAATAATTTAGAATTAGTTCAGGAAAATGAAGGCAGTGATCTTTCAGAAATAAAGAAGTTGCAGGTGGAATCACCTAATAAAAACCCTCTTGAAGTTTTGGTTGATAGAGATATTGGTTCAACAGGAGAGGATCCGATTTCCTCATCCATGGAAGAACTGGACTTGAATTCAGGTACAATGGTGGTGCTTGATTGTCAAGACTTGAAAGATGAGGATTGTATTATATCTACCCAACTTGGTTCCGAAGATTTGGCTCCTGTTGTGGATGTTCCTCCCATGAGTTGCCTTACCGGGGAGTTATCCTCAGATGTAACTCATAACAATCCACAGGATGAACCAAGTTTAGCCAAAAATGAACAAGTGTGTTCTGATGTCGAATCAATTTCTGAAGAGGGACTGGTGCCCGGTGATGAAATAAGATCCACCTCAGGTGTTGATCCTGTTGAAGGTGATGGTCATGTTAAAGAGCTGTCTTCTCCTGATACTCCTGTGATGGTAAATGATGTGTTCAGTGAAAATGTTGATTCAGAAGACCAAGCTACTGTTCCTTCTGTTAATAGTGATGACAAAGATGCAGGTATTTTAACCTGTCCAGCTCCATCTGGAAGTTCTTCCAGTTTGCAAAAACCTCTCTCTTCTTCCTTGGATTATTATAAGATGGAAATGGAATCCAATGAAGTAAAATCAACCCAAATTTTAAAGGACTTGAATGTAGAAAAAATGGATAGCCAACTGGAGCAATTGACAGCCATCTCACCACTTGATGTCATTTATTCTCCAACCATTAATTGTACAGATACGGAAGAATGTCTCTCTGCTGTTGCAGATCCGCATGAGAAAGAGATGGAAGTTAACAAGGCAGTTGCTAGAGAATCTTTGACAGAATTAGAGAGACAGAATGAAATGGATCAACCAATAGCTGTGTCTTCTGGTGTGCAATTGAATCTGGAGAAACAGGGACCTGGTGATCTTTCTAATTTAGAAAGATGTAATGATAATCAAAATTCATCTCCTTGGGAGAAACTCCAACACAGTGCTTCTGTCGACGACATGAAAATGGTGCAAGAATTTTCAGGGTTAGATAGTCAGCAGTCAGAATCTATATTTGATGACTTGAATGATCCTTCACAGAACGAGAGAGAGAGTTTTTCATCACCTTTTAACAAGCTTGAGTCTGGAAGTGATGTAGAGCTGTTTTCACGATCACATGTTTGTGAATGGGATGCAGAGTTTATGCTCAGCGGTGAAGGAAACATAGCCTCTGAGAAAACTCAATTGGAGAAAGAAAGCATTCATGCCACTCCCGACTTCCCTTCAGATGACCATGCAGATGAACTGTCATCATCTCATCCCTTACCACAGTCATCTAGCCAGGAGGTTAACCCTACAGAACATGTCATGGAGCCATCGAAGTCTCTTCCCGATCTCTTTACTGAGTCAGCTGAGAATAATCTCGATGAGATGCCTCCTATGCCCCCTCTACCACCTATGCAATGGAGAATGGGCAAGGTTCAGCATTCTTCCCCTTTTCTGCAGAGAGAACAGGTAGAAGTAAGTCAGGCCTCATTCCAACCAATGCTGCCTTCAGGCCAACCAATGCTTCCAATTGAACCTGATAATACCGCTCAATTTGGTTTTCCAACATCTGAGAGAGATAATTTGCTGTCTCAGAATCCATTTGTGCCTGTCATGGCAGTGAGTGATAAGCTCCAATCTTCTGGGTTTCCAGTGGGTGTTTCAGGGCATCCTGTTGCTATACCTTTTCAATTTCCTATCATGGTTAATGAAGCAAATGGTCAATACCTATTGTTGGACAGAAGCCAAATTGCAAATCCTTTCTATACATTACCTGTTGTAACCACCAGCAGGCCTCAGCATGGCTACATTGTTGCTTCTGAGGGACTAATGGCACAAAATTCAACCCTATACCCTCCAACTCCATCTGCCGATTTTTCTGCTTCTGTAACTGATTTCACCTCTCCACAGGAAAAATTGACCCAATCCCCAAGTCAATTAATGACTGAGACTAGTTTAGAAGTCAAAGCACATGAGCATCCCATAAGAAATGTCGTACCTGTGGCCACTTCCCAAGATTCTCATGTTACTTCTGGACAAGATTCCATCTCTGCAGACGAACAAACTCAACCTCTTATTCTGTCAAAGACAGAGACTAGTGAAGATGACTCACTTCAGCAGTCTACAGATAACAGGTTATCCGCTGAAAGCCCTCCACATGCTTATGTTGCTTCTGAGGGAGAAACAGTTGAGAGTTCAGATCCTTGCCCTCCAATACCACCTGCTGAATGTGCTGTTCCTGAACATGATTCCATCTCTCCACAAGAAAAACAAATTCATCCTCCCAGTCAGTTTTCAACAGAGGCTAGTTCCGAAGTTAAAACACCGAATCAGTCTATGAGTAATGCTGAAGTGGGACAAGGACATCTGCCTATCTCACTCATGTTGCCACCTCACATGAATAGTATGGCACCTAATCAGCATTTCTTGCCTCCTGAGGGGGAAACATCATTGTCCTTAGCTGCATCTGCTCAAACTTCAGATTTTGAGAGTGAAAGGACAAATCCAAAACCAAAGAACAAGCTTCCTCGTCCTCGGAATCCTCTAATTGACGCTGTTGCTGCTCATGACAAAAGCAAGCTTAGGAAGGTTACTGAACGGGTTGTTCCTCAAACCGCCCCAAAGACAGATGAAAGAGATTCATTGCTAGAACAGATAAGAACAAAGTCCTTCAACTTGAAGCCTACTGTAGCGACGCGACCCAGCATTCAAGGTCCTAAAACAAACTTGAAGCTTGCCGCCATCTTGGAAAAAGCAAATGCAATTCGCCAGGCTTTGGCCGGAAGTGATGAAGACGATGATGCGGATAGTTGGAGTGAGTGA 4944 0.4246 MPLSKYHIRNEYGLADPELYRAADVRDDPEALLEAVAMGGLVGLLRQLGDLAEFAAEIFHDLHEEVMATAARGHGLMTRVQQLEAEVPSLEKAFFSQTHHSSFYTNGGVDWHPNLRSEQNLVTQGDLPRFVMDSYEECRGPPRLFLLDKFDVAGAGACLKRYTDPSFFKMESASFETKMVEVHREKRIRKIKQKKGQRLRDGEGPNVAPSHAKLHQLLLEERIENGYTDPARLVKLKKRQLSGSAVEVKDGKSYMTKFLETASPDHKMIYETSIIPLSVKPMSDDTSEAGIKMLEISGTSPVKRRLGNENTYPSPNQQESELKGFSEMDGKANGDVVKVKEQKFSRVTDEISSNHPKFPMETELAVDEQKKIEGILDGYHSDTISEVDNYMDALNTMESELETDNECKPKRRLLNIQKATDGDGKENYQPEARFSYSQSFGDSSTSDEIGSFKQDRNEEQIEEHAQLSDSRSTGTSSMSDNSLFRRDGDDHTEMQSHFSDSPSIGNSSMSDDNSSSKKERSPSHHTDSLSSVVENIQSEPILSTKTKIYEPEVEDTLPRQPPHIVVHDAPDGEEEISDSGQASNELMTSGHVLCSVHGPASPVTLPPQAQSDELPFDPVELNSTVEEDEERTDRMKSMVAEPVSLSAVKEDACPLDLSDKNSLDKLDNYDPNVQSDDLLQFSNNLELVQENEGSDLSEIKKLQVESPNKNPLEVLVDRDIGSTGEDPISSSMEELDLNSGTMVVLDCQDLKDEDCIISTQLGSEDLAPVVDVPPMSCLTGELSSDVTHNNPQDEPSLAKNEQVCSDVESISEEGLVPGDEIRSTSGVDPVEGDGHVKELSSPDTPVMVNDVFSENVDSEDQATVPSVNSDDKDAGILTCPAPSGSSSSLQKPLSSSLDYYKMEMESNEVKSTQILKDLNVEKMDSQLEQLTAISPLDVIYSPTINCTDTEECLSAVADPHEKEMEVNKAVARESLTELERQNEMDQPIAVSSGVQLNLEKQGPGDLSNLERCNDNQNSSPWEKLQHSASVDDMKMVQEFSGLDSQQSESIFDDLNDPSQNERESFSSPFNKLESGSDVELFSRSHVCEWDAEFMLSGEGNIASEKTQLEKESIHATPDFPSDDHADELSSSHPLPQSSSQEVNPTEHVMEPSKSLPDLFTESAENNLDEMPPMPPLPPMQWRMGKVQHSSPFLQREQVEVSQASFQPMLPSGQPMLPIEPDNTAQFGFPTSERDNLLSQNPFVPVMAVSDKLQSSGFPVGVSGHPVAIPFQFPIMVNEANGQYLLLDRSQIANPFYTLPVVTTSRPQHGYIVASEGLMAQNSTLYPPTPSADFSASVTDFTSPQEKLTQSPSQLMTETSLEVKAHEHPIRNVVPVATSQDSHVTSGQDSISADEQTQPLILSKTETSEDDSLQQSTDNRLSAESPPHAYVASEGETVESSDPCPPIPPAECAVPEHDSISPQEKQIHPPSQFSTEASSEVKTPNQSMSNAEVGQGHLPISLMLPPHMNSMAPNQHFLPPEGETSLSLAASAQTSDFESERTNPKPKNKLPRPRNPLIDAVAAHDKSKLRKVTERVVPQTAPKTDERDSLLEQIRTKSFNLKPTVATRPSIQGPKTNLKLAAILEKANAIRQALAGSDEDDDADSWSE* 1648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g2401 1647 PANTHER WH2 DOMAIN, SCAR/WAVE FAMILY PROTEIN-RELATED 1 1427 - -
Amo12g2401 1647 MobiDBLite consensus disorder prediction 1374 1588 - -
Amo12g2401 1647 MobiDBLite consensus disorder prediction 1463 1493 - -
Amo12g2401 1647 ProSiteProfiles WH2 domain profile. 1585 1603 IPR003124 GO:0003779
Amo12g2401 1647 MobiDBLite consensus disorder prediction 780 799 - -
Amo12g2401 1647 MobiDBLite consensus disorder prediction 1107 1152 - -
Amo12g2401 1647 MobiDBLite consensus disorder prediction 999 1027 - -
Amo12g2401 1647 Gene3D - 1 91 - -
Amo12g2401 1647 MobiDBLite consensus disorder prediction 598 617 - -
Amo12g2401 1647 MobiDBLite consensus disorder prediction 1130 1147 - -
Amo12g2401 1647 MobiDBLite consensus disorder prediction 1043 1073 - -
Amo12g2401 1647 MobiDBLite consensus disorder prediction 449 466 - -
Amo12g2401 1647 PANTHER WH2 DOMAIN, SCAR/WAVE FAMILY PROTEIN-RELATED 1449 1647 - -
Amo12g2401 1647 MobiDBLite consensus disorder prediction 1335 1354 - -
Amo12g2401 1647 MobiDBLite consensus disorder prediction 1164 1183 - -
Amo12g2401 1647 MobiDBLite consensus disorder prediction 467 482 - -
Amo12g2401 1647 MobiDBLite consensus disorder prediction 1107 1129 - -
Amo12g2401 1647 MobiDBLite consensus disorder prediction 999 1025 - -
Amo12g2401 1647 MobiDBLite consensus disorder prediction 814 845 - -
Amo12g2401 1647 MobiDBLite consensus disorder prediction 436 538 - -
Amo12g2401 1647 MobiDBLite consensus disorder prediction 1558 1572 - -
Amo12g2401 1647 PANTHER WASP-1 1449 1647 IPR028288 GO:0005856|GO:0030036
Amo12g2401 1647 PANTHER WASP-1 1 1427 IPR028288 GO:0005856|GO:0030036
Amo12g2401 1647 Coils Coil 961 981 - -
Amo12g2401 1647 MobiDBLite consensus disorder prediction 497 512 - -
Amo12g2401 1647 MobiDBLite consensus disorder prediction 1374 1422 - -
Amo12g2401 1647 Gene3D - 1554 1647 - -
Amo12g2401 1647 Gene3D - 102 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g2401 Amo-Chr12 106359906 106368329 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g2401 - - aip:107625836 3121.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g2401 12 106359906 106368329 Amo12g2401 12 106359906 106368329 ECH
Amo12g2401 12 106359906 106368329 Amo02g2656 02 83024603 83032945 hybridization
Amo14g2928 14 124743614 124750802 Amo12g2401 12 106359906 106368329 PCT
Amo04g1861 04 85612091 85619306 Amo12g2401 12 106359906 106368329 PCT
Amo12g2401 12 106359906 106368329 Amo14g2928 14 124743614 124750802 PCT
Amo12g2401 12 106359906 106368329 Amo04g1861 04 85612091 85619306 PCT