Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1777 ATGGGTGGGAAACTCTTCTTTTGGCTCGTCATTTGTTTCCCTTCCAGCATTGCCCTTCTCGCCACAACTTTCTACCAGGTTTTGATCCTATCTGACTTGGAAGCTGACTATATAAACCCGTTCGACGCGGCGTCTCGGATTAACTACTTCATTCTTCCTGAGTACATAGGACAGGGAGCTCTCTGCGTACTGTGCCTCGTCACTGGACACTGGTTCATGTTCTTGCTCTCTCTTCCAGTTACTTGCTATCACATCATGCGATATGTGAAACGGGAGCATCTTATTGATGTTACTGAAGTGTTTAGAGGACTTAATGCTGAGAGGAAATTTCGGCTAGCCAAACTTGTCATGTACTTAATACTCCTCATTGTAGTCATATTCAGGATTCTGGCAGCAGGAAGTTCAATATTTTACCACAATTCCAAGTTTGAAGAATTAGACATTCGGTTGAATACTCTAGGATACTAG 468 0.4316 MGGKLFFWLVICFPSSIALLATTFYQVLILSDLEADYINPFDAASRINYFILPEYIGQGALCVLCLVTGHWFMFLLSLPVTCYHIMRYVKREHLIDVTEVFRGLNAERKFRLAKLVMYLILLIVVIFRILAAGSSIFYHNSKFEELDIRLNTLGY* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1777 155 SMART Cornichon_2 6 127 IPR003377 GO:0016192
Amo12g1777 155 Pfam Cornichon protein 7 127 IPR003377 GO:0016192
Amo12g1777 155 PANTHER CORNICHON-RELATED 4 132 - -
Amo12g1777 155 PANTHER PROTEIN CORNICHON 4 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1777 Amo-Chr12 85527524 85530546 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1777 K20368 - gmx:100819066 216.853
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g1777 12 85527524 85530546 Amo12g1777 12 85527524 85530546 ECH
Amo12g1777 12 85527524 85530546 Amo02g1955 02 63653703 63657926 hybridization
Amo16g0172 16 2337840 2340990 Amo12g1777 12 85527524 85530546 PCT
Amo12g1777 12 85527524 85530546 Amo16g0172 16 2337840 2340990 PCT