Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1738 ATGCCTGTCCCAGCCGTAGTTGCTATTGTTCCTGTGGGAATATTATTCTTCACCACCGGTCTCATCGTTAATCTCATTCAGACAATATGTTATTGCCTTGTACGACCAATATCCAAGAGTTTGTACAGAAGAATCAGTAGGGTAGCACTAGAATTGTTGTGGCTAGAACTTGTATGGCTATTTGATTGGTGGGCAGGAGTTAAGCTCCAAATATTCACAGATCAAGAAATCATAAACAAGATGGGTAAAGAGCATGCACTTGTCATATGCAATCACAGAAGTGATATTGATTGGCTTGTTGGATGGATATTAGCTCAGCGATCTGGATGCCTTGGCAGTGCCCTTGCTGTGATGAAGAAGTCATCAAAGTTTCTTCCGGTGATTGGTTGGTCAATGTGGTTTGCTGAATATCTTTTTCTAGAGAGAAGTTGGGCCAAAGATGAAAACACATTGAAGTCAGGCATACAACGACTTCAGGATTACCCTCTTCCCTTTTGGTTGGCTCTCTTTGTAGAAGGAACAAGATTTACACAGGCCAAACTTTTAGCTGCTCAGGAATATGCAACCACAACTGGATTGCCTGTTCCTAGAAACGTTTTGATTCCAAGAACTAAGGGATTTGTTTCAGCAGTGAGCAATATGCGTTCTTTTGTTCCTGCCATTTATGATGTAACTCTAGCTATTCCTAAGAATTCACCTCCTCCGACATTGCTAAGAATCTTCAAGGGAGAACCTTCAGTGGTGCATGTTCATATTAAACGACATTTGATGAATGAATTACCCAAGGATGATGAAGGTGTTGCTCAATGGTGTCGAGATGTATTTGTGGCTAAGGATGCATTGTTAGACAAACATAAATATGAAGATAAATTTAGTGACAAAGAATCTCATGATGCTGGTAAACCAATCAAGTCTCTATTGGTTGTTATATCATGGTATATTTTGCTTTTTGTGGGATTTGTGAAGTTCGTTCTCTTTTTTCCACTACTAATGTCATGGAAAGGTCTCACAATTTCAATGGCTGCTTTGGGAGTTGTTACTATCCTAATGCAAATTTTGATTCGGTTCTCACAATCTGAGCATTCAACACCAGCAAAAGTTGTCCCTATAAAAACAAATAGAGGAGAACAGTTACAAGCAGAGACTAGGGACATTGTGAATGTTTTAGAATTTATGTGA 1179 0.3927 MPVPAVVAIVPVGILFFTTGLIVNLIQTICYCLVRPISKSLYRRISRVALELLWLELVWLFDWWAGVKLQIFTDQEIINKMGKEHALVICNHRSDIDWLVGWILAQRSGCLGSALAVMKKSSKFLPVIGWSMWFAEYLFLERSWAKDENTLKSGIQRLQDYPLPFWLALFVEGTRFTQAKLLAAQEYATTTGLPVPRNVLIPRTKGFVSAVSNMRSFVPAIYDVTLAIPKNSPPPTLLRIFKGEPSVVHVHIKRHLMNELPKDDEGVAQWCRDVFVAKDALLDKHKYEDKFSDKESHDAGKPIKSLLVVISWYILLFVGFVKFVLFFPLLMSWKGLTISMAALGVVTILMQILIRFSQSEHSTPAKVVPIKTNRGEQLQAETRDIVNVLEFM* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1738 392 Pfam Acyltransferase C-terminus 239 312 IPR032098 -
Amo12g1738 392 CDD LPLAT_LCLAT1-like 61 253 - -
Amo12g1738 392 Pfam Acyltransferase 75 228 IPR002123 GO:0016746
Amo12g1738 392 PANTHER 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED 7 375 - -
Amo12g1738 392 SMART plsc_2 86 208 IPR002123 GO:0016746
Amo12g1738 392 PANTHER 1-ACYL-SN-GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-LIKE PROTEIN 7 375 - -
Amo12g1738 392 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 16 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1738 Amo-Chr12 83590544 83598147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1738 3 383 Miscellaneous Gene Families AT3G57650 69.816 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1738 K13523 - gmx:100812696 589.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g1738 12 83590544 83598147 Amo12g1738 12 83590544 83598147 ECH
Amo12g1738 12 83590544 83598147 Amo02g1910 02 61499834 61506300 hybridization
Amo16g0190 16 2603898 2609812 Amo12g1738 12 83590544 83598147 PCT
Amo12g1738 12 83590544 83598147 Amo16g0190 16 2603898 2609812 PCT