Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1648 ATGGGTTCTGAAGAAAAAATGAAGCTTCCAATTCTAAACTTCACCAAAGAAGATCTGAAGCCGGGAAGCAATTCCTGGTCAATTGCATGCGAGAGGGTGCGCAAAGCACTCGAAGAACATGGCTGCTTTGTAGTTGTGTATGATAAAGTTTGTGATGAGCTTGAAAATGGTGTTTTCAATTCCATGAAGGAACTGTTTGATCTCCCAACAGAAACAAAAATGAGAAACAACTATGAGGGGATGCCCTTGAAAGGCTACGTTGGACAGATCCCCAAGATTCCTCTCCATGAAAGCATGGGCATAGATGAGGGAACAACGCTTCACAACATTCAAGGCTTTGCTCAAAAATTGTGGCCTAATGGAAATCATCATTTATGTAAGAATTTGTTTGAGTATGCAAAGATAGCAGAAGAATTGGATCGAATGGTAGCAAGAATGATATTTGAAAGTTATGGTCTAATGGAGGAGCATTATGAAGCATACATGGGGTCCACAAGTTATCTCCTAAGGTTGTTGGCACACAAATCACCAAAAGAGGTTGTTGATGAGCCTCAACTGGGTTTGGTGTGTCACACTGACAAGAGCTTCACAACAATTCTTCACCAAAACCATGTCAATGGACTCATGGTGGAGACAAAAGATGGGAATTGGATCCATGTTGATTTTTCTCCTACTAATTCCTTTGTGGTCATGGCCGGCGATGGTTTAATGGCATGGAGCAATGAGAGAATCAAGTCACCGAACCATAAAGTTGTGATGAATAATAATAAGAAGAATGAAACGAGGTACTCTCTTGGTTTGTTTGCCTTTTACAAAGGGATTCTTCAAGCACCTGAAAAGCTTATAGATGAAGAGCACCCTTTGAAGTATAAGCCATTTGATCATCTTGCATTACTGAACTTCAGTTACAGCGTTAACATTAAAGAATATTGTGGCATGTAA 942 0.4013 MGSEEKMKLPILNFTKEDLKPGSNSWSIACERVRKALEEHGCFVVVYDKVCDELENGVFNSMKELFDLPTETKMRNNYEGMPLKGYVGQIPKIPLHESMGIDEGTTLHNIQGFAQKLWPNGNHHLCKNLFEYAKIAEELDRMVARMIFESYGLMEEHYEAYMGSTSYLLRLLAHKSPKEVVDEPQLGLVCHTDKSFTTILHQNHVNGLMVETKDGNWIHVDFSPTNSFVVMAGDGLMAWSNERIKSPNHKVVMNNNKKNETRYSLGLFAFYKGILQAPEKLIDEEHPLKYKPFDHLALLNFSYSVNIKEYCGM* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1648 313 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN 3 313 - -
Amo12g1648 313 SUPERFAMILY Clavaminate synthase-like 6 304 - -
Amo12g1648 313 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 3 313 - -
Amo12g1648 313 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 167 271 IPR005123 -
Amo12g1648 313 Pfam non-haem dioxygenase in morphine synthesis N-terminal 23 87 IPR026992 -
Amo12g1648 313 Gene3D - 7 311 IPR027443 -
Amo12g1648 313 Pfam 2OG-Fe(II) oxygenase superfamily 174 268 IPR044861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1648 Amo-Chr12 76754378 76756854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g1648 126 291 Glycosyltransferase AT5G59530 30.058 7.34e-10 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1648 - - aip:107625404 632.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g1648 12 76754378 76756854 Amo02g1787 02 56037826 56041339 hybridization
Amo16g0293 16 4431274 4434349 Amo12g1648 12 76754378 76756854 PCT