Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g1110 ATGAATGTGGTAGGCAAAGTTGGAAGCTTGATAACACAAGGTGTGTACTCAGTTGCTACCCCTTTTCACCCTTTTGGTGGTGCTGTTGATGTGATTGTTGTTCAGCAGCAAGATGGGACCTTCCGGAGCACACCTTGGTATGTTCGGTTTGGTAAGTTTCAGGGTGTTCTCAAAGGCGCCGAAAAGATTGTTCGGATAAATGTTAATGGTGATGAAGCCAGCTTTCATATGTATCTTGATAATTCTGGGGAGGCTTATTTTGTGAAGGAGGTGGATGATGACAAAGGAATCGACTCAAATGCGGATGCTGTAGGTTCTAATAATAATAGTAACGGTTTTTTGCCTAATGGCCATAGACTTGATCATAGCATCTCGGATTCTGGGGTGCTTAAGTTGAAAAGAGAAAATGGTGTCTCCGGAGCAATTCAAAGGGCCGAATCTGAAGGTGATCGGAGATTTTATGAATACCAAGAAGATCAATCATCTCTCGCTGATTCAGTTGACTTCTCAGAATATTCCAATGCGTATGATAGTCTAGAGGGAGAGAATTTTGTTGATTCACAGGGTTCCCATCCAGAGATGGTCTTGGTTGTTGATGGCCATGTATTGACGGCCCCTATCTCAGAGTCGGAGCAGAATGAGGAGAATCTGCAGTTAAAAACCCCTCAATTTCATCTTGGCCCGGGTGAAGAGGCTGACATATGTGAAGGCAATGAAGAGCTTATTTCTGGTGAAAATTCTTGGGCTGCTAATTATATTGGTCAGCTGGATGCTACAAAAGCTGATGGCACGCCAAGATGCGACACTAATGGTGATGATTCAAGATGCGACACTAATGGTGATGATATTACTTCTCAACTCCAGCCAGAAGTTTGTCAACATGATGAACAACATATTTCTCATGCCCAGGAGCCCTCGGGTTTAAAAGAAGATGATCTTAAAATGCAAGCTGATTCAGAAATGGTTGGATCTGCTATTGTGACACAGAAGGTTTCCAAAAGCTGTTTGGGGCCACTAAATTTATCTCAGCAAGGTGGAAATGTCACTTTTCAAATTTCACCAGAGGGATCTAATGCATGTTTTCCAGCTGATGATCGAATTAAACAAGAGAGATTTATACAACATCAAGAAGAGTTATCTACTGGTTCTACTTCATCGAATGGCCATGGATCACCAAATTCAGTATTGCAGCTTCCAGAGGCTGACAATAATGCATCTGGAGAAGTTGAGATTAGTTCTGGCCCTTGTTCTGTTGCTATTGGTACTGAACAGAACAATGGACACGATTTCATGTTGAGCTCTAATGGTGGTGTAGATGAGAGTCAACAAGCCCCTGCACTTGAAGATATTAGTGATAAAAGTGAGGTAGTGGAACCCGAAAGAGACACTTCAGATAAAGGGGACCAAAGTCATTCGGGATTTGAGATCTCACTTTGTGGTCATGAACTTAAGGTGGGTATGGGTTTGGAAGCTGCTGCGGAAGTGTTTGAAGCACATCGTGTTTCTGCAGAGGACTTTACATGCTCTGCGCCATCGATAATTAAGAATCAAAATCTTATTATCAAGTTTAAAGAGAGGTACTTGACGTGGGAAAAGGCTGCTCCTATTGTTCTTGGAATTGCTGCCTATGGTTTAGATTTACCTGTTGAGCCAAAAGATACAATTAATGTGGAACAAGATTACTCGCTGAAGTCTAAAGATGATGAGCCTGGGTCATCGTCATCTGGACGAAGATGGAGACTGTGGCCAATACCTTTTAGAAAGGTCAAGACTCTTGAGCACTCTACTAGCAATGACTCAAATGAAGACGTGTTTTTGGATTCCGAGTCCACACTTGTAGAGCCTTCTGGTACCCAGGGAATTTCTCGTAAGCAATTTGTAAGGACAAATGTTCCGACTAATGAGCAGATAGCATCCTTGGACCTTAAAGATGGTCAAAATTTGGTAACCTTCAGTTTCTCTACAAGGGTTCTCGGAACACAACAGGTTGATGCTCACATATATTTGTGGAAGTGGAACACAAGAATTGTGATTTCAGATGTTGATGGAACTATTACCAAGTCTGATGTTTTGGGGCAATTCATGCCCTTAGTTGGCAGAGATTGGACACAATCTGGAGTAGCAAGGCTTTTCTCTGCCATTAAGGTAAGCACATCAACCTTCTCTGAGCTCAGAATTGATATTGATCAGACAAGGCTGAAGTCTGTTCAGGAAAATGGATACCAGCTACTATTTCTGAGTGCCCGTGCGATTGTACAAGCATATCTAACCCGGAACTTCTTGCTTAACATAAAGCAGGATGGGAAAACCCTACCAAATGGACCTGTTGTTATTTCACCAGATGGTTTATTTCCATCACTTTTCCGAGAAGGTGAGGCTTATCTATAA 2388 0.4221 MNVVGKVGSLITQGVYSVATPFHPFGGAVDVIVVQQQDGTFRSTPWYVRFGKFQGVLKGAEKIVRINVNGDEASFHMYLDNSGEAYFVKEVDDDKGIDSNADAVGSNNNSNGFLPNGHRLDHSISDSGVLKLKRENGVSGAIQRAESEGDRRFYEYQEDQSSLADSVDFSEYSNAYDSLEGENFVDSQGSHPEMVLVVDGHVLTAPISESEQNEENLQLKTPQFHLGPGEEADICEGNEELISGENSWAANYIGQLDATKADGTPRCDTNGDDSRCDTNGDDITSQLQPEVCQHDEQHISHAQEPSGLKEDDLKMQADSEMVGSAIVTQKVSKSCLGPLNLSQQGGNVTFQISPEGSNACFPADDRIKQERFIQHQEELSTGSTSSNGHGSPNSVLQLPEADNNASGEVEISSGPCSVAIGTEQNNGHDFMLSSNGGVDESQQAPALEDISDKSEVVEPERDTSDKGDQSHSGFEISLCGHELKVGMGLEAAAEVFEAHRVSAEDFTCSAPSIIKNQNLIIKFKERYLTWEKAAPIVLGIAAYGLDLPVEPKDTINVEQDYSLKSKDDEPGSSSSGRRWRLWPIPFRKVKTLEHSTSNDSNEDVFLDSESTLVEPSGTQGISRKQFVRTNVPTNEQIASLDLKDGQNLVTFSFSTRVLGTQQVDAHIYLWKWNTRIVISDVDGTITKSDVLGQFMPLVGRDWTQSGVARLFSAIKVSTSTFSELRIDIDQTRLKSVQENGYQLLFLSARAIVQAYLTRNFLLNIKQDGKTLPNGPVVISPDGLFPSLFREGEAYL* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g1110 795 Pfam LNS2 (Lipin/Ned1/Smp2) 630 715 IPR013209 -
Amo12g1110 795 Pfam LNS2 (Lipin/Ned1/Smp2) 734 790 IPR013209 -
Amo12g1110 795 PANTHER LIPIN 1 716 IPR026058 -
Amo12g1110 795 MobiDBLite consensus disorder prediction 451 469 - -
Amo12g1110 795 Pfam lipin, N-terminal conserved region 1 95 IPR007651 -
Amo12g1110 795 SMART lns2 676 792 IPR031315 -
Amo12g1110 795 PANTHER PHOSPHATIDIC ACID PHOSPHOHYDROLASE 1 716 - -
Amo12g1110 795 PANTHER PHOSPHATIDIC ACID PHOSPHOHYDROLASE 735 790 - -
Amo12g1110 795 Pfam Lipin/Ned1/Smp2 multi-domain protein middle domain 474 582 IPR031703 -
Amo12g1110 795 MobiDBLite consensus disorder prediction 377 441 - -
Amo12g1110 795 MobiDBLite consensus disorder prediction 377 473 - -
Amo12g1110 795 PANTHER LIPIN 735 790 IPR026058 -
Amo12g1110 795 SUPERFAMILY HAD-like 668 761 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g1110 Amo-Chr12 30909258 30914125 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g1110 K15728 - gmx:100798304 1031.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo16g1698 16 33815517 33818983 Amo12g1110 12 30909258 30914125 PCT
Amo06g1034 06 15090444 15096802 Amo12g1110 12 30909258 30914125 PCT
Amo12g1110 12 30909258 30914125 Amo16g1698 16 33815517 33818983 PCT
Amo12g1110 12 30909258 30914125 Amo06g1034 06 15090444 15096802 PCT