Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0470 ATGTCTTCCACCTTTGTTGCTCTTCATAGTTCTCTTCTTCAATCTCAGTTTCTAGGCCAAGATGGCCTCACTCATCTCTACCATTCCAAAACCTTCATTCACACAAAACCAAAAGCATACAAAGTATGTGCCAAATTTGACATGCTGCAAATCATGGGAGGTAGAGGACTATGCAATGGAGAAGAAGGCCTTATACAAGAGCTGAAAAGACAAGTTGAGAATCCACCATCACCATCATCATCAGAACAAGAACAAGAGAATTTAGCACTGGCCAATGTTGCAGCAGAAGATGGTTTTGAGAAAGAGTTGATGGGGCTAACAGGTGGCTTCCCCGGTGGCGAAAAAGGCTTGAAGAAGTTCATCATGGAGAACCCTCCTAAAAAAGGTGATGGAATCCAAAGCTTGAAACTTTCGATGGCGAAGAAGCCAAAGCCACCGGAGCTTCCTCTTCTGCTTCCGGGAATGATCGCTATTGTGAGCAATCCGAATAATCCGTATTACATGTACTGTGGCATTGTTCAAAGGATCACTGATGGAAAAGCAGGGGTTCTGTTTGAAGGAGGGAACTGGGACAGGTTAATCACATTCAGGCTTGAGGAATTGGAGAGAAGAGAAAAGGGTCCTCCAATGAAGAATCCAAAGTCTTGTGTTCTTGAACCGTTTCTTGAGAAGAAATCATGA 681 0.4361 MSSTFVALHSSLLQSQFLGQDGLTHLYHSKTFIHTKPKAYKVCAKFDMLQIMGGRGLCNGEEGLIQELKRQVENPPSPSSSEQEQENLALANVAAEDGFEKELMGLTGGFPGGEKGLKKFIMENPPKKGDGIQSLKLSMAKKPKPPELPLLLPGMIAIVSNPNNPYYMYCGIVQRITDGKAGVLFEGGNWDRLITFRLEELERREKGPPMKNPKSCVLEPFLEKKS* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0470 226 PANTHER NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT S, CHLOROPLASTIC 3 225 IPR021659 GO:0009767
Amo12g0470 226 Pfam NAD(P)H dehydrogenase subunit S 151 202 IPR021659 GO:0009767
Amo12g0470 226 MobiDBLite consensus disorder prediction 204 226 - -
Amo12g0470 226 Gene3D - 146 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0470 Amo-Chr12 7612977 7613911 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0470 K00345 - gmx:100527145 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0470 12 7612977 7613911 Amo02g0617 02 7976532 7977424 hybridization
Amo14g3390 14 136418495 136419520 Amo12g0470 12 7612977 7613911 PCT
Amo12g0470 12 7612977 7613911 Amo14g3390 14 136418495 136419520 PCT