Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0460 ATGGAAGAAGCTCCACAAAGGTATGCAGTTGTGACTGGAGCAAATAAAGGAATTGGAATAGAAATAGTAAGGCAATTGGCTTCAAATGGAGTGAAGGTTGTGTTGACTTCAAGAGATGAGAAGAGAGGCCTTCATGCTTTGGAAACCCTCAAAGATCTCTCTGATTTTGTGTTCTTTCACCAGCTTGATATTGCTGATCCTGCAAGTATTGCTTCTCTTGCAGATTTCATCAAATCCAAATTTGGCAAACTTGATATTCTGGTTAACAATGCAGGGATTAATGGACTTGTAATTACAGACAACGATTTAATCCCTTCAGTAATATTGACACCCCAGGATTTATCTGAAGAAGAACTAGAAAAAGCAAGGATTGAAACATATGAATTAGGCGAAGAATGTTTGCAAATAAATTATTACGGTTCTAAAAGAACGACTGAATCTCTTCTTCCCCTCCTCCAGTTATCTGATTCACCAACAATTGTGAACGTGTCATCTTCCTTGGGAATATTAGAGCGTATATCAAACAAATGGGGCAAAGGGGTGTTAAGTGATGCCGAAAACCTTACTGAAGAGAGAGTCGATGTGGTGTTAAAGGAGTTTATGAAAGATTTCAAAGAAGGGTCATTAAAAGACAAAGGCTGGCCTACGGCTTTTGGTGCCTACACTCTGTCCAAAGCTGCTATGAATGCCTATACAAGAATTCTTGCCAAAATGTTTCCTACTTTTTGCATCAATTGTCTTTGTCCTGGTTATATTAAGACTGATATCACTGCAAATACTGGCTTTTATACGGTGGAAGAAGGTGCTGCTAATGTTGTGAGATTAGCATTACTTCCAAATGGTAGTCCTTCTGGTCTTTTTTATAACAGGAGTGAAGTGCATTCCTATTAA 891 0.3838 MEEAPQRYAVVTGANKGIGIEIVRQLASNGVKVVLTSRDEKRGLHALETLKDLSDFVFFHQLDIADPASIASLADFIKSKFGKLDILVNNAGINGLVITDNDLIPSVILTPQDLSEEELEKARIETYELGEECLQINYYGSKRTTESLLPLLQLSDSPTIVNVSSSLGILERISNKWGKGVLSDAENLTEERVDVVLKEFMKDFKEGSLKDKGWPTAFGAYTLSKAAMNAYTRILAKMFPTFCINCLCPGYIKTDITANTGFYTVEEGAANVVRLALLPNGSPSGLFYNRSEVHSY* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0460 296 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 1 295 - -
Amo12g0460 296 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 82 93 IPR002347 -
Amo12g0460 296 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 166 IPR002347 -
Amo12g0460 296 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 221 240 IPR002347 -
Amo12g0460 296 PANTHER SALUTARIDINE REDUCTASE-LIKE 1 295 - -
Amo12g0460 296 Gene3D - 2 296 - -
Amo12g0460 296 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 282 IPR036291 -
Amo12g0460 296 PRINTS Glucose/ribitol dehydrogenase family signature 221 240 IPR002347 -
Amo12g0460 296 PRINTS Glucose/ribitol dehydrogenase family signature 152 168 IPR002347 -
Amo12g0460 296 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Amo12g0460 296 PRINTS Glucose/ribitol dehydrogenase family signature 240 257 IPR002347 -
Amo12g0460 296 PRINTS Glucose/ribitol dehydrogenase family signature 82 93 IPR002347 -
Amo12g0460 296 Pfam short chain dehydrogenase 8 169 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0460 Amo-Chr12 7480727 7484075 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo12g0460 3 257 Acyl Lipid Metabolism Gene Families AT1G63380 26.038 1.35e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0460 K15095 - gmx:100801677 391.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0460 12 7480727 7484075 Amo12g0460 12 7480727 7484075 ECH
Amo14g3382 14 136266948 136274087 Amo12g0460 12 7480727 7484075 PCT
Amo12g0460 12 7480727 7484075 Amo04g2937 04 104788932 104797581 PCT