Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo04g2937 ATGGCAGAGGCAAATCTAAGATATGCTGTTGTTACAGGGTCAAACAAGGGGATAGGATTTGAGACAGTTAAAGAGTTGGCCTCAAATGGAATCAAGGTGGTGCTCACTGCAAGAGATGAGAGTAAGGGTATTGAAGCCATTGAGAAGCTCAAAGAGTGTGGTGTCTCTGATAAGCTTGTGGTTCTTCACCAACTTGATGTCACTGACCATGCTAGCATTGCATCATTAGCGGAGTTTGTTAAGACACAGTTCCCGAGACTTGATATATTGGTGAATAATGCAGGAATCAGTGGTGTCAATCCATATGAAAAGGATGAACCAACATTTAAATGGGAGGAACTAACACAAACTTATGAGATGGCTGAAAAGTGTATATTGACAAACTACTATGGTGCCAAGAAAACAACTGAGACATTTCTTCCACTACTTCAGTTATCAAACTCACCAAGGGTTGTTAATGTTTCCTCTGAAGCAGGGTTGTTAAAGAACATATCAAACAAATGGGCTAAGGAGGTGCTTGGTGATGCTGAAAACCTTAGAGAAGAGAAAATAGATGAGGTRCTCAAGGAGTTCCTCAAAGACTTCAAAGAAGGCAYACTAGAAATCAAAGGCTGGCCAATTAACATGAGTGCCTATAGGGTCTCAAGAGCAGCAATGAATTCTTATACAAGATTCATGGCAAAGAAGCAMCARAACYTGKGCATYAATTGTGTGTGCCCTGGTCCTTGCAAAACAGACATAACCAGAAACACTGGTACTCTTTCTGCTRCTGAAGGTGCTGCAAGTGTTGTGAGATTAGCACTTCTACCTGATGGCTCACCTTCTGGCCTTTTCTTTATTAGAAAAGAGTTGTCAAGGTCAAACAGAGGGATAGGATTTGAGACAGTTAAGGAATTGGCCTCAAATGGAATCAAGGTGGTTCTCACAGCAAGAGATGAGAAGAAAGGCAATGAAGCCATTGAAAAATTGAAAGATTTTGGTCTCTCTGACTTTGTGGTTCTTCACCAGCTTGATGTCACTGACCATGTTAGCATTTCATCTTTGGTACAATTTGTTAGCACACACTTTGGGAGACTTGATATATTGGTGAACAATGCAGGAATAAGTGGTGTGAATCCAGATGAAAAGGGGGAAGCAACAATCATCTGGGAAGAACTGACTCAAACTTATGAAATGGCTGAAAAATGCATATTGACAAATTACTATGGTGCTAAGGACACAACTGAGGCATTTCTACCCCTTCTCAAGTTATCTGATTCACCTATTATCGTTAATGTTTCCTCGCGAGGAGGATTGTTAAAGCACATATCAAACAAATGGGCAAAAGGGGTGCTAGATGATGATGAGAATCTAACAGAAGAGAGAATAGATGAGGTGTTGAAGGAGTTTATGGAAGACTTCAAAGAAGGTTTGATAGAAAGCAATGGGTGGCCAACCTTGTTATCTGCAAATAGAGTATCAAAAGCAGCATTGAATTCTTACACAAGAATTCTGGCAAAGAAGCATCCAAACTTGTGCATCAATTGTCTCTGCCCTGGTTTTGTGAAAACAGACATAAATAGGAACACTGGAATCTTATCTGTGAGTGAAGGTGCTGCAAGTGTTGTCAGATTAGCACTTCTATCTCATGGTTCCCCTTCTGGCCTTTTCTTTATTAGGCAAGAATTGTCAACTTTTTTAATTTATTACTTATCATTTTAG 1701 0.398 MAEANLRYAVVTGSNKGIGFETVKELASNGIKVVLTARDESKGIEAIEKLKECGVSDKLVVLHQLDVTDHASIASLAEFVKTQFPRLDILVNNAGISGVNPYEKDEPTFKWEELTQTYEMAEKCILTNYYGAKKTTETFLPLLQLSNSPRVVNVSSEAGLLKNISNKWAKEVLGDAENLREEKIDEVLKEFLKDFKEGXLEIKGWPINMSAYRVSRAAMNSYTRFMAKKXQNLXINCVCPGPCKTDITRNTGTLSAXEGAASVVRLALLPDGSPSGLFFIRKELSRSNRGIGFETVKELASNGIKVVLTARDEKKGNEAIEKLKDFGLSDFVVLHQLDVTDHVSISSLVQFVSTHFGRLDILVNNAGISGVNPDEKGEATIIWEELTQTYEMAEKCILTNYYGAKDTTEAFLPLLKLSDSPIIVNVSSRGGLLKHISNKWAKGVLDDDENLTEERIDEVLKEFMEDFKEGLIESNGWPTLLSANRVSKAALNSYTRILAKKHPNLCINCLCPGFVKTDINRNTGILSVSEGAASVVRLALLSHGSPSGLFFIRQELSTFLIYYLSF* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo04g2937 566 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 288 541 IPR036291 -
Amo04g2937 566 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 287 559 - -
Amo04g2937 566 Gene3D - 287 559 - -
Amo04g2937 566 Gene3D - 4 286 - -
Amo04g2937 566 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 273 IPR036291 -
Amo04g2937 566 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 4 285 - -
Amo04g2937 566 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 212 231 IPR002347 -
Amo04g2937 566 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 157 IPR002347 -
Amo04g2937 566 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 IPR002347 -
Amo04g2937 566 CDD carb_red_PTCR-like_SDR_c 7 284 IPR045313 GO:0016616
Amo04g2937 566 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 285 - -
Amo04g2937 566 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 287 559 - -
Amo04g2937 566 Pfam short chain dehydrogenase 8 163 IPR002347 -
Amo04g2937 566 Pfam short chain dehydrogenase 289 433 IPR002347 -
Amo04g2937 566 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Amo04g2937 566 PRINTS Glucose/ribitol dehydrogenase family signature 85 96 IPR002347 -
Amo04g2937 566 PRINTS Glucose/ribitol dehydrogenase family signature 231 248 IPR002347 -
Amo04g2937 566 PRINTS Glucose/ribitol dehydrogenase family signature 143 159 IPR002347 -
Amo04g2937 566 PRINTS Glucose/ribitol dehydrogenase family signature 212 231 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo04g2937 Amo-Chr4 104788932 104797581 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo04g2937 288 433 Miscellaneous Gene Families AT2G29150 33.108 3.00e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo04g2937 K15095 - jre:109004875 684.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo04g2937 04 104788932 104797581 Amo12g0458 12 7457436 7461274 PCT
Amo12g0460 12 7480727 7484075 Amo04g2937 04 104788932 104797581 PCT