Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0438 ATGGGGCTTTGTTTAGCTAAGGATCAAGATAAAGATGATGATTCTGACCATCATGTGGACATGGTTTCTGGGAATGTGCAACTTATTACCACAAAAGAATCTTGGGACCAAAAGTTGCAAGAATCATCGAAGGATCACAAAATTCTTCTTGTTCAACAGCTGATTGCAAATTTCAGTGCTGCATGGTGTGGTCCGTGTAAGCTTATTGCACCATGTTACTGTGAGTTGTCAGAGAAATACTCATCAATGATCTTCTTACTAGTTGATGTGGATGAACTAACTGATTTTAGTACTTCCTTGGACATCAGAGCCACACCAACTTTCTTCTTTTTTAGAGATGGACAACAAATTGATAAACTCATAGGAGCCAACAAGCCAGAGTTGGCAAAGAAGATTGCTTTGTTTTCTACTTCATTTGGTTCCTCAATACCAAATTACCAATAG 444 0.3829 MGLCLAKDQDKDDDSDHHVDMVSGNVQLITTKESWDQKLQESSKDHKILLVQQLIANFSAAWCGPCKLIAPCYCELSEKYSSMIFLLVDVDELTDFSTSLDIRATPTFFFFRDGQQIDKLIGANKPELAKKIALFSTSFGSSIPNYQ* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0438 147 PRINTS Thioredoxin family signature 54 62 - -
Amo12g0438 147 PRINTS Thioredoxin family signature 62 71 - -
Amo12g0438 147 PRINTS Thioredoxin family signature 101 112 - -
Amo12g0438 147 SUPERFAMILY Thioredoxin-like 19 133 IPR036249 -
Amo12g0438 147 CDD TRX_family 33 133 - -
Amo12g0438 147 ProSitePatterns Thioredoxin family active site. 55 73 IPR017937 -
Amo12g0438 147 Pfam Thioredoxin 29 132 IPR013766 -
Amo12g0438 147 Gene3D Glutaredoxin 1 139 - -
Amo12g0438 147 PANTHER THIOREDOXIN 1 137 - -
Amo12g0438 147 PANTHER THIOREDOXIN H9 1 137 - -
Amo12g0438 147 ProSiteProfiles Thioredoxin domain profile. 6 137 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0438 Amo-Chr12 7150293 7154657 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0438 K03671 - gmx:100813401 196.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0438 12 7150293 7154657 Amo02g0520 02 6413882 6418000 hybridization
Amo14g3068 14 129587012 129590320 Amo12g0438 12 7150293 7154657 PCT
Amo04g2136 04 91458335 91461646 Amo12g0438 12 7150293 7154657 PCT
Amo12g0438 12 7150293 7154657 Amo14g3068 14 129587012 129590320 PCT
Amo12g0438 12 7150293 7154657 Amo04g2136 04 91458335 91461646 PCT