Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0520 ATGGGGCTTTGTTTAGCTAAGGATCAAGATAAAGATGATGATTCTGACCATCATGTGGACATGGTTTCTGGGAATGTGCAACTTATTACCACAAAAGAATCTTGGGACCAAAAGTTGCAAGAATCATCGAAGGATCACAAAATTCTGATTGCAAATTTCAGTGCTGCATGGTGTGGTCCGTGTAAGCTTATTGCACCATGTTACTGTGAGTTGTCAGAGAAATACTCATCAATGATCTTCTTACTAGTTGATGTGGATGAACTAACTGATTTTAGTACTTCCTTGGACATCAGAGCCACACCAACCTTCTTCTTTTTTAGAGATGGACAACAAATTGATAAACTCGTAGGAGCCAACAAGCCAGAGTTGGCAAAGAAGGTTGCTTTGTTTTCTACTTCATTTGGTTCCTCAATACCAAATTACCAGTAG 429 0.3916 MGLCLAKDQDKDDDSDHHVDMVSGNVQLITTKESWDQKLQESSKDHKILIANFSAAWCGPCKLIAPCYCELSEKYSSMIFLLVDVDELTDFSTSLDIRATPTFFFFRDGQQIDKLVGANKPELAKKVALFSTSFGSSIPNYQ* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0520 142 Pfam Thioredoxin 29 127 IPR013766 -
Amo02g0520 142 ProSitePatterns Thioredoxin family active site. 50 68 IPR017937 -
Amo02g0520 142 Gene3D Glutaredoxin 1 134 - -
Amo02g0520 142 SUPERFAMILY Thioredoxin-like 19 127 IPR036249 -
Amo02g0520 142 ProSiteProfiles Thioredoxin domain profile. 6 132 IPR013766 -
Amo02g0520 142 PRINTS Thioredoxin family signature 49 57 - -
Amo02g0520 142 PRINTS Thioredoxin family signature 57 66 - -
Amo02g0520 142 PRINTS Thioredoxin family signature 96 107 - -
Amo02g0520 142 PANTHER THIOREDOXIN 1 132 - -
Amo02g0520 142 PANTHER THIOREDOXIN H9 1 132 - -
Amo02g0520 142 CDD TRX_family 33 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0520 Amo-Chr2 6413882 6418000 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0520 K03671 - gmx:100813401 202.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0438 12 7150293 7154657 Amo02g0520 02 6413882 6418000 hybridization
Amo14g3068 14 129587012 129590320 Amo02g0520 02 6413882 6418000 PCT
Amo04g2136 04 91458335 91461646 Amo02g0520 02 6413882 6418000 PCT
Amo02g0520 02 6413882 6418000 Amo14g3068 14 129587012 129590320 PCT
Amo02g0520 02 6413882 6418000 Amo04g2136 04 91458335 91461646 PCT